1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTGgtgaggattttttaatgtttttttggttaattgatggagatggagagttggagaccagtttgttaatgtgttgtacattgcactgtttgtagagtgtaat...
species | Zea mays |
transcript | GRMZM2G110185_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTCGAGAAGGAGATCAAGGATATGGCCAAGAAAATCAACGACCTCTGTG GGATAAAGGAGTCTGATACAGGGCTGGCTCCCCCTAGCCAGTGGGATTTGGEST: gi|5846988|gb|AW000067.1|AW000067
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTGgtgaggattt ... cttaacgcagGGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGG
EST: ACGAGCCTCTGTG GGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGEST: gi|211035074|gb|FL073374.1|FL073374
genomic: ACGA-CCTCTGTGgtgaggattt ... cttaacgcagGGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTG GGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|5296364|gb|AI783134.1|AI783134
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTGgtgaggattt ... cttaacgcagGGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGG
EST: ACGAGCCTCTGTG GGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGEST: gi|211010592|gb|FL355819.1|FL355819
genomic: ACGA-CCTCTGTGgtgaggattt ... cttaacgcagGGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTG GGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGGEST: gi|211283518|gb|FL004413.1|FL004413
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTGgtgaggattt ... cttaacgcagGGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGG
EST: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTG GGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGG
genomic: GGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTGgtgaggattt ... cttaacgcagGGATAAAGGAGTCTGATACAGGGCTGGCTCCACCTAGCCAGTGGGATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGGAAATGGCCAAGAAAATCAACGACCTCTGTGgtgaggattttttaatgtttttttggttaattgatggagatggagagttggagaccagtttgttaatgtgttgtacattgcactgtttgtagagtgtaat
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA