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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGGCGCGGGGGACGACGCCGGCCAAGCTGCGGCGGCGGTCCAGAAGAACGGCGGCTGGTTCGGCTTCATCTCCGAGGCCCTCGAGGTCGTTCTCAAGgtaatgattgcctaatcaatggacgggcccgcggctgctaccacgtaccggattctttctgggagaattgaatgcgcccgaattaagagttatggaagtg...

Basic information

species Zea mays
transcript GRMZM2G110063_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g05800.1 (Oryza sativa), 5'ss of exon 1
CGCGGGCGCGGGGGACGACGCCGGCCAAGCTGCGGCG---GCGGTCCAGAAGAACGGCGGCTGGTTCGGCTTCATCTCCGAGGCCCTCGAGGTCGTTCTCAAGgtaatgattgcctaatcaatggacgggcccgcggctgct---accacgtaccggattctt-tctgggagaattgaatgcgcccgaattaagagttatggaagtg
   ||| |  || |  |  | |||  |||| ||||||   | ||  ||||||||||| || |||||||| ||||||||||||||| | |||||||| || |||||||     |||   ||      |   ||    |          ||| |   |  |||   |   |||    | |    |    |||  | |  |     ||| 
---GGGTGGCGGTGGTGGTGGCGGTGAAGCGGCGGCGTCGGTGGCGCAGAAGAACGGGGGGTGGTTCGGGTTCATCTCCGAGGCCTTGGAGGTCGTGCTTAAGgtaagcgccgcc--gtcttctcccaaacctataggaatccaagtcactttaggagttcaggttcaggattgctaagattggtt-aatggatatatccctgagt-

upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 1
CGCGGGCGCGGGGGACGACGCCGGCCAAGCTGCGG---CGGCGGTCCAGAAGAACGGCGGCTGGTTCGGCTTCATCTCCGAGGCCCTCGAGGTCGTTCTCAAGgtaatgattgcctaatcaatggacgggcccgcggctgctaccacgtaccggattctttctgggagaattgaatgcgcccgaattaagagttatggaa-gtg
   ||  || | ||||   || |      |  | |   | || || ||||||| ||| || |||||||||||||||||||| ||  | ||| |||||||||||||||   || | || ||      ||     |        |  |  ||   |  |  || ||       | |    |  ||| ||  | |    |  | |||
---GGTTGCAGCGGACACTGCGGCTTCCACCACCGATGCTGCCGTACAGAAGAGCGGAGGTTGGTTCGGCTTCATCTCCGAAGCTATGGAGTTCGTTCTCAAGgtaaacttttcatactcctgcttcgtagttgttaacttcat-atatataaggattcttttgcatttgctaagactgagcgagttttgtgacgcgtcacgtg

upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 1
CGCGGGCGCGGGGGACGACGCCGGCCAAGCTGCGGCGGCGGTCCAGAAGAACGGCGGCTGGTTCGGCTTCATCTCCGAGGCCCTCGAGGTCGTTCTCAAGgtaatgattgcctaatcaatggacgggcccgcggctgctac---cacgtaccggattctttctgggagaattgaatgcgcccgaattaagagttatggaagtg
 |  |  ||||     |  ||   |    | |  || || || ||||||| ||| ||||||||||||||||||||||| ||| | ||| |||||||||||||||   |           |     |   |     | |||     | |||     ||   | ||  |  | |||  | |   |  | | | || | |   |  
GGTTGCTGCGGACTCTGCGGCTTCCACCACCGATGCTGCCGTACAGAAGAGCGGAGGCTGGTTCGGCTTCATCTCCGAAGCCATGGAGTTCGTTCTCAAGgtaaacttcatactcctgcttcgtagttgctaacttcctatatataagtattctgttgaatttgctaagactgagcgagtt-gtgtgacgcgtcacgtgtg--