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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTAATTTCTCATCTATATTTAGTGGTGCCATAATCATTTTTCCACTGGTGTTCGGCAATAATGTCGGAGAGCGAGTTAGCAGTAATAAAACCAGAGgtacaatcccctgcagcccccctctccggtaattagagggaagcaattacttttccaatcttatgcggttcaattcagcctgtcttgagcttattggtggtgaactataacag

Basic information

species Zea mays
transcript GRMZM2G109725_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109725_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 2
---CATTGTAATTTCTCATCTATATTTAGTGGTGCCATAATCATTTTTCCACTGGTGTTCGGCAATAATGTCGGAGAGCGAGTTAGCAGTAATAAAACCAGAGgtacaatcccc--------------tgcagcccccctctccggtaattagaggg-aagcaattacttttccaatcttat--gcggttcaattcagcctgtcttgagcttattggtggtgaactataacag
     |||||| || ||   | ||||  ||  || |    |  || || | ||||  || |||||||||||| || || ||||| ||||||||||| |||||||||  | |||                  | |     | || | | ||| ||||| || |||||  || ||||  |||||  ||  |||| ||    |    || |  | ||||    ||||||   ||||
GTTTCTTGTAAATTTTCTGGTGTATT--GTATTGGCGGCTTTGTTGTTTCTCTGGAATT-GGCAATAATGTCAGAAAGTGAGTTGGCAGTAATAAAGCCAGAGgtatgacccctatgcatttctagatcataactattttttctgtttattggaggggaaacaattg-ttctccagccttatcagctattcatttggttccaatttaatttcattg----tgaactc--acag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211041297|gb|FL239839.1|FL239839
EST:     GGTGTTCGGCAATAATGTCGGAGAGCGAGTTAGCAGTAATAAAACCAGAG                         GCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA
genomic: GGTGTTCGGCAATAATGTCGGAGAGCGAGTTAGCAGTAATAAAACCAGAGgtacaatccc ... actataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA