1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGGATGATTATGATATGGATGATCCCATTGATGACATGGTAGACGAGCAGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttccttttcttttttcatatactgcatgtgctatcgagtcttcacatagcttttgagatgcacaattcttattggacgagtataatatcatcaa...
species | Zea mays |
transcript | GRMZM2G109039_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCA AATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGACEST: gi|211150113|gb|FL386529.1|FL386529
genomic: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttcc ... tcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
EST: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCA AATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGACEST: gi|60342865|gb|DN209838.1|DN209838
genomic: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttcc ... tcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
EST: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCA AATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
genomic: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttcc ... tcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGATGATTATGATATGGATGATCCCATTGATGACATGGTAGACGAGCAGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttccttttcttttttcatatactgcatgtgctatcgagtcttcacatagcttttgagatgcacaattcttattggacgagtataatatcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA