1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGCAGATAAACATAACCCGTAAAAAATACAGACAGTCCAGATTAGAACAGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctcttactcctgttggaagtttggctttgtaaaattttctatccgcatgtgtttgacacttgccttggaatag
species | Zea mays |
transcript | GRMZM2G109039_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAG GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATEST: gi|20301188|gb|BQ164131.1|BQ164131
genomic: AGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctct ... cttggaatagGATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAAT
EST: AGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAG GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATEST: gi|20301181|gb|BQ164124.1|BQ164124
genomic: AGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctct ... cttggaatagGATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAAT
EST: AGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAG GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATEST: gi|20300911|gb|BQ163854.1|BQ163854
genomic: AGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctct ... cttggaatagGATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAAT
EST: AAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAG GATTGCAAACCANCAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAATEST: gi|20300918|gb|BQ163861.1|BQ163861
genomic: AAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctct ... cttggaatagGATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAAT
EST: AAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAG GATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAAT
genomic: AAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctct ... cttggaatagGATTGCAAACCAACAGAGAAAGGTGGGATATACTATGAGTTTAGACGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCAGATAAACATAACCCGTAAAAAATACAGACAGTCCAGATTAGAACAGTACAAAAATTATGAGAATGTACCTAACTCTGGAGAAGAAGCTATGAAGgtttgcctcttactcctgttggaagtttggctttgtaaaattttctatccgcatgtgtttgacacttgccttggaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC