Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAAGAAGCTGTCCAGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaatatttggcagaggctcaatgcttttgcaagagattttaaagaaatctcaacagcgcttttacttctgctctacctttttgctctgtgctccacag

Basic information

species Zea mays
transcript GRMZM2G108919_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108919_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 4
GCAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAAGAAGCTGTCCAGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaatatttggcagaggctcaatgcttttgcaagagattttaaagaaatctcaaca-gcgcttttacttctgc--tctacc---tttttgctctgtgctccacag
 ||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||| ||| |||||||||| ||||| ||||| |||||||      ||||  |    |   |   |   ||  || ||| |   ||   ||   | ||||      ||  | |||    ||| || | ||||||| ||||
ACAGCCAAAAGGTTTTGCTTATGTGGAATTTCTGGAACAAGAAGCAGTTCAGGAGGCTCTGAATTTGAATGAATCTGAACTGCATGGTCGTCAGATAAAGgtgcagaaattaccaacagatccctgttttgtcacctgaaggattcaaaaactccttttcacatgtttttgtcctcgcaatttactcaatttctgttttgtgctcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9731934|gb|BE510686.1|BE510686
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAATTAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|78178964|gb|DV549337.1|DV549337
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|50329632|gb|CO524758.1|CO524758
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGCCAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|6563947|gb|AW231569.1|AW231569
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCCCCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
EST: gi|89247954|gb|DY619740.1|DY619740
EST:     AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAG                         GTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC
genomic: AGGAAGCTCTGAACTTGAATGAATCGGAATTGCATGGTCGACAGATTAAGgttcagaaat ... tgctccacagGTTGCGCCGAAGAGGACTAATGTCCCTGGGATGAAGCAGCGTCCACCACGC