Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcctacgtactcgcccaccttgccttttcgatgcttggtgttttcttgcagtgtgttgaggtttcactagagcggttcgatatgctataagcc...

Basic information

species Zea mays
transcript GRMZM2G108919_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108919_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 2
CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttccta-cgtactc---gcccaccttgccttttc-gatgcttg-gtgttttc----ttgcagtgtgttgaggtttcactagagcggttcgatatgctataagcc
|| |||||||| ||| |||||||||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||  ||    || |||   |||  |||    ||| | |||||||   ||||||     ||||  | || |  | |   |   |     |||||| |          
CTGCAGGAGCTCGACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgtggtccgccgggtgtgctcactgcctgcctaatttttactgatgcttttatgtttttcttgttgcgatctgctatgttcatatcggcctcattcgatct----------

upper sequence: GRMZM2G108919_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52140.1 (Oryza sativa), 5'ss of exon 2
CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttccta-cgtactc---gcccaccttgccttttc-gatgcttg-gtgttttc----ttgcagtgtgttgaggtttcactagagcggttcga--tatgctataagcc
            ||| |||||||||| | |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||  ||    || |||   |||  |||    ||| | |||||||   ||||||     ||||  | || |  | |   |   |     |||||  | |  | | ||  
------------GACCAGATGAAGCGAAGGCTGAAGGAGATGGAGGAAGAGGCCGCGGCCCTCCGCGACATGCAGGCCAAGGTCGCCAAGGAGATGCAAGGTGGTCCGCCGGgtgtgctcactgcctgcctaatttttactgatgcttttatgtttttcttgttgcgatctgctatgttcatatcggcctcattcgatctgtattgtgagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7135303|gb|AW498018.1|AW498018
EST:     TATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGNTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: TATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|60351908|gb|DN218881.1|DN218881
EST:     CCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: CCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211050414|gb|FL364288.1|FL364288
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211491424|gb|FL310090.1|FL310090
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211538316|gb|FL356780.1|FL356780
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211406953|gb|FL337667.1|FL337667
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGASSGCGAAGGAGCAGGTGGATGCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGA-GGCGAAGGAGCAGGTGGATGCC
EST: gi|211283212|gb|FL331388.1|FL331388
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211191463|gb|FL364434.1|FL364434
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|9731847|gb|BE510599.1|BE510599
EST:     GATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211517204|gb|FL332921.1|FL332921
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211067042|gb|FL326738.1|FL326738
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211510457|gb|FL354887.1|FL354887
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211378524|gb|FL350958.1|FL350958
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211478350|gb|FL364133.1|FL364133
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|120480223|gb|EH210775.1|EH210775
EST:     GCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211260950|gb|FL364877.1|FL364877
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211357287|gb|FL353300.1|FL353300
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211210828|gb|FL334782.1|FL334782
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211264649|gb|FL311742.1|FL311742
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211165160|gb|FL324137.1|FL324137
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211420489|gb|FL364946.1|FL364946
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211004051|gb|FL318405.1|FL318405
EST:     GGCCGCCGCCCTCCGCGAWATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTA
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTA
EST: gi|9731848|gb|BE510600.1|BE510600
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211150849|gb|FL322008.1|FL322008
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211276608|gb|FL366596.1|FL366596
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211475946|gb|FL359362.1|FL359362
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|84980134|gb|DW530483.1|DW530483
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211289480|gb|FL348652.1|FL348652
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|84976804|gb|DW475226.1|DW475226
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211067393|gb|FL344092.1|FL344092
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211179405|gb|FL363893.1|FL363893
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211295277|gb|FL323384.1|FL323384
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|60399133|gb|DN231947.1|DN231947
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211125800|gb|FL321191.1|FL321191
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|31351934|gb|CD436291.1|CD436291
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211285004|gb|FL330933.1|FL330933
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211277782|gb|FL330880.1|FL330880
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|31351939|gb|CD436296.1|CD436296
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|60399607|gb|DN232418.1|DN232418
EST:     CGCC-AGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: CGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211333443|gb|FL346031.1|FL346031
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|31350541|gb|CD434898.1|CD434898
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211279695|gb|FL337096.1|FL337096
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|60394010|gb|DN226880.1|DN226880
EST:     AGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: AGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211475451|gb|FL342194.1|FL342194
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGAGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAG-GTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCC
EST: gi|211030847|gb|FL329818.1|FL329818
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCMC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211012344|gb|FL317983.1|FL317983
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211038605|gb|FL345816.1|FL345816
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211310796|gb|FL367440.1|FL367440
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211391812|gb|FL356647.1|FL356647
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: gi|211019206|gb|FL365154.1|FL365154
EST:     GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: GGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGAGGAGGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcctacgtactcgcccaccttgccttttcgatgcttggtgttttcttgcagtgtgttgaggtttcactagagcggttcgatatgctataagcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccac