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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTGGAAAGTGGCGTCCAGATGAATCACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAGgtttgtctctgtgcaaagttttgcaataagttatgcctgataagatagtatcccctcattctttccattgatgttttaggattcgtgtaatcacaacttt...

Basic information

species Zea mays
transcript GRMZM2G108589_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108589_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g23670.1 (Oryza sativa), 5'ss of exon 3
ACATGTGGAAAGTGGCGTCCAGATGAATCACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAGgtttgtctctgt-------gcaaagttttgcaataagttatgcctgataagatagtatcccctcattctttccattgatgttttaggattcgtgtaatcacaacttt
|||  ||||||||||| |||| |||||||  | ||||||||||| |||||||| || |||||| |||| || |||||||||||| |   |        || |  | | | || || ||||| |||||  ||||||     |   |  |     |     || ||                     
ACAAATGGAAAGTGGCATCCACATGAATCGTACAGACCTGAAATTGATGATGCCCCTGTTTTCACTCCAACGGAAGAGgtttgtgtacatttatcttacataactattccatgagatatgc-tgatagcatagtaatagttagctaatcgttctttcccttcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211286620|gb|FK972435.1|FK972435
EST:     CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAG                         GAATTTAAGGATCCAATTGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA
genomic: CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAGgtttgtctct ... tttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA
EST: gi|76286850|gb|DV026418.1|DV026418
EST:     CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAG                         GAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA
genomic: CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAGgtttgtctct ... tttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA