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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctttctttcatttttggctgtccttgctgatgttttttcattagcatgaaaattcattcatacatttgtatatcagtatatggcatccattag...

Basic information

species Zea mays
transcript GRMZM2G108364_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g56170.1 (Oryza sativa), 5'ss of exon 2
CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctttc-tttcatttttggctgtccttgctgatgttttt-----tcattagcatgaaaattcattcatacat-ttgtatatcagtatatggcatccattag
|  | ||||||||||||||||| || ||||||||||| ||||||||||||||  |||| ||||||||||| || ||||||||||| |||||||| |||||||||||||||   ||| || | ||   |   |   | |  ||| |       | ||   || || | ||  || |  |  | ||||    || ||| |||       
CTGTTAGTGATCCAATCTCAGCAACATTCTGTGAACCCGTTGAGAAAGCTAATACAAGTCATTCCTTCACTGCTGGACTTGCTCATAGTGTAGGCTTAAGgtcagttcttgagtttaatgtctgcgcggtatgcataacctttatggatgctaatattgtgtaactacagccaaaactactctatacatttacatgccat-------

upper sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G22680.1 (Glycine max), 5'ss of exon 2
CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgt-cagttctttctttcatttttggctgtcc---ttgctgatgtttt---ttcattagcatgaaaattcattcata-catttgtatatcagtatatggcatccattag
| ||   ||||||    |  || ||  ||||||||||||| || |  || ||||||| |||||| |||||||| ||||||||||| ||||| ||| | ||||  | |  |||| |   |||||  || ||    |  |  |  ||||    |  ||  |    ||||| | | | |  | ||  |||| | |  ||  ||        
CGATTGATGATCCGGCATTGGCAACTCTCTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGACTTGCTCACAGTGTGGGACTTAGgtataatattttcctcattttttccctatcaaaatgtccaaaattttgatctatttcactcacaaattgactgaaagtacttccatataattgcatttca--------

upper sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA15G07450.1 (Glycine max), 5'ss of exon 2
CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctttctttcatttttggctgtccttgctgatgttttttcattagcatgaaaattcattcatacatttgtatatcagtatatggcatccattag----
||||     ||||       || || |||||||||||||||||||| || || ||||||||||| || ||||||||||| ||||| ||||| ||  | ||||   ||  || |||||||           |   | |   | || |  |   ||  |   || |    |  |||   | | ||  | |   | | || |     
CCATTGACAATCCTGCACTTGCCACTTTCTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTGGCTCACAGTGTTGGTCTCAGgtgcatttattttttcattcaatctcagtatcaattaccctcttcctctcctatttactctcttg---atttttacctgtgaggttgtca-acctataaacata

upper sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G31850.1 (Glycine max), 5'ss of exon 2
CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctttctttcatttttggctgtccttgctgatgttttttcattagcatgaaaattcattcatacatttgtatatcagtatatggcatccattag-----
||||     ||||       || || || ||||||||||||||||| || || ||||||||||| || ||||||||||| ||||| ||||| ||  | ||||   ||  || |||||||     |  || | |      ||      ||    |   | ||  |   |  |||| ||  |  ||   || || ||  |||     
CCATTGACAATCCTGCACTGGCCACTTTTTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTGGCTCACAGTGTTGGTCTCAGgtgcatttattttttcatt-----caatcttagtatgaattaccctcttgctctcctatttactctcttgatttttacctgtgtggttgtcaacctatagacata

upper sequence: GRMZM2G108364_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s0301g00050.t01 (Vitis vinifera), 5'ss of exon 2
CCATCAGTGATCCAATCTCAGCTACGTTCTGTGAACCAGTTGAGAAAGCTAACTCAAGCCATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctttctttcatttttggctgtccttgctgatgttttttcattagcatgaaaattcattcatacatttgtata--tcagtatatggcatccattag
||||   | |||||   |  || || |||||||| ||||||||||| || || |||||||||||||||||| ||||||| ||||| || |||||  | ||||| ||  ||| |    |       | |  ||   | | | |  || ||   || | | ||||||||  |      | |  |  |||    | ||| | |  
CCATTGATAATCCAGCATTGGCAACCTTCTGTGAGCCAGTTGAGAAGGCAAATTCAAGCCATTCCTTCACAACAGGACTGGCTCACAGCGTAGGGCTTAGgtctgtattttttccattccactattttttttcagggtttctactctttcatat-acatttcattcaggctcccagacaaattggtaaccaggatcaaatt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149072983|gb|EE161244.2|EE161244
EST:     CATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAG                         GAATCAACCTCTGCGCGTGTACAGCATGGTGAAATATGCTGCAATAGCACG
genomic: CATTCCTTCACAGCAGGACTTGCTCAAAGTGTAGGATTAAGgtcagttctt ... ttgtatccagGAATCAACCTCTGCGCGTGTACAGCATGGTGAAATATGCTGCAATAGCACG