1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAAAAGTGAAGATTGCAGAGCATAAGCTTACTGGACATAGGGTTGCTATAAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttgttatccagtcattttgcattttcactaatatttttttgataataaacaagtttagttttaatagtgcttttgataatattaatacatggagttgctttgataattaagaccacatccctccctatcatgtttccag
species | Zea mays |
transcript | GRMZM2G107867_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|211427354|gb|FL101767.1|FL101767
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|211427350|gb|FL101763.1|FL101763
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|211427353|gb|FL101766.1|FL101766
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|211210979|gb|FL114021.1|FL114021
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTCEST: gi|211427352|gb|FL101765.1|FL101765
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
EST: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAG CAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
genomic: AAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttg ... atgtttccagCAAAGAGAGAATTCAAGATATTGAAGTTGTTCATTCACCCCCATATCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAAGTGAAGATTGCAGAGCATAAGCTTACTGGACATAGGGTTGCTATAAAGATCATCAACTGCCGCCAAATGAGAAATATGGAAATGGAAGAGAAAGgtatggtttgttatccagtcattttgcattttcactaatatttttttgataataaacaagtttagttttaatagtgcttttgataatattaatacatggagttgctttgataattaagaccacatccctccctatcatgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA