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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCAGGGGCCGGAGAGAGCAGGAGGAGGCGGAGACATGGGTAGCTTCGCTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaattcctcctacctcgtcggaatcgcatctttgactctgagtttcttggccttccttggtgagttcttgctgatgacgtcccctttttttttccag

Basic information

species Zea mays
transcript GRMZM2G107639_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107639_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g08270.1 (Oryza sativa), 5'ss of exon 2
CCTGCAGGGGCCGGAGAGAGCAGGAGGAGGCGGAGACATGGGTAGCTTCGCTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacg-----aattcctcctacctcgtcggaatcgcatctttgact-ctgagtttcttggccttccttggtgagttcttgctga-tgacgtcccct-ttttttttccag
| || |||||   |  |||| ||||||||| || || |||||||||||||  | ||||||||||||||| ||||||||||| || ||||||||||| ||||||| |      |  |  ||| |||||||| ||||||||||||  || |||| ||  |||| |||  ||| ||||||||  ||   |   | |   |  | ||||| |||
CTTGGAGGGGTGAGGAAGAGGAGGAGGAGGAGGTGAGATGGGTAGCTTCGGGAGGCTGGCGAGGAGGGCCGTGGAGACGGAAGCGCCGGTCATGGTCAAGgtgatggagaagaagctccctgcctcgtcgaaatcgcatctttcccttctgatttctttggtcttgattgatgagttctatctctcttgtgccttgtgctcttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211470276|gb|FL336876.1|FL336876
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211537775|gb|FL336421.1|FL336421
EST:     CTAAGCTGGCGWGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211528508|gb|FL328866.1|FL328866
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|148932368|gb|EC876010.2|EC876010
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211529039|gb|FL347042.1|FL347042
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211307789|gb|FL085770.1|FL085770
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211325052|gb|FL357886.1|FL357886
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211519775|gb|FL337741.1|FL337741
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211329406|gb|FL358391.1|FL358391
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211526539|gb|FL366365.1|FL366365
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|91877308|gb|EB407265.1|EB407265
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCCAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|67030337|gb|CO459086.1|CO459086
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211061387|gb|FL333865.1|FL333865
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211262318|gb|FL317280.1|FL317280
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211237919|gb|FL362192.1|FL362192
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211525076|gb|FL312407.1|FL312407
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|148990980|gb|EE032414.2|EE032414
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|149037081|gb|EE155270.2|EE155270
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211023084|gb|FL313921.1|FL313921
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211213774|gb|FL353738.1|FL353738
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|148931036|gb|EC873618.2|EC873618
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211305634|gb|FL309433.1|FL309433
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211448663|gb|FL323020.1|FL323020
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211362582|gb|FL351447.1|FL351447
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211136252|gb|FL346220.1|FL346220
EST:     CTAAGCTGGCGAGGAGGGCGGTGGARACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211320586|gb|FL352820.1|FL352820
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|76286951|gb|DV026519.1|DV026519
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211162581|gb|FL363060.1|FL363060
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211126683|gb|FL312966.1|FL312966
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|19351033|gb|BM895565.1|BM895565
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCTGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGACGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211010784|gb|FL361163.1|FL361163
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211111425|gb|FL330322.1|FL330322
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211135049|gb|FL315824.1|FL315824
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|148963140|gb|EE014107.2|EE014107
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211260539|gb|FL346343.1|FL346343
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|148950038|gb|EC895570.2|EC895570
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|149112179|gb|EE295100.2|EE295100
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGATGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|149084340|gb|EE173781.2|EE173781
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211467483|gb|FL327943.1|FL327943
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|148947797|gb|EC893285.2|EC893285
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211320872|gb|FL365292.1|FL365292
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211171826|gb|FL323734.1|FL323734
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211391856|gb|FL357117.1|FL357117
EST:     AAGCTGGCGAGGAGGGCAGGTGGAGACGGACGCTACCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: AAGCTGGCGAGGAGGGC-GGTGGAGACGGACGCT-CCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211026505|gb|FL356245.1|FL356245
EST:     CTAAGCTGGCGANGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|50325408|gb|CO520534.1|CO520534
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
EST: gi|211050425|gb|FL364299.1|FL364299
EST:     CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAG                         ATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG
genomic: CTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaatt ... ttttttccagATACAAGAACTGCTCCGAGGGGCCAAGGATGTGATGTCGCTTGCGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGCAGGGGCCGGAGAGAGCAGGAGGAGGCGGAGACATGGGTAGCTTCGCTAAGCTGGCGAGGAGGGCGGTGGAGACGGACGCTCCGGTCATGGTGAAGgtgacgaattcctcctacctcgtcggaatcgcatctttgactctgagtttcttggccttccttggtgagttcttgctgatgacgtcccctttttttttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA