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TCAGCGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattctattggtcgcctctgtattccttatcatattgccagctttgggtatgaacgtcaaatatgctcagtagccatgtcatcgttagctctccttg...
species | Zea mays |
transcript | GRMZM2G107575_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|86468277|gb|DY234647.1|DY234647
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAACATAAGTGGTTCGGAGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|149079633|gb|EE168627.2|EE168627
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|101388735|gb|EB816351.1|EB816351
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|91053272|gb|EB163690.1|EB163690
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|32799975|gb|CD952211.1|CD952211
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTAEST: gi|78085933|gb|DV514326.1|DV514326
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTA
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|32804727|gb|CD956963.1|CD956963
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTAEST: gi|211199934|gb|FL305445.1|FL305445
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTA
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|149016909|gb|EE045638.2|EE045638
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|211202489|gb|FL305452.1|FL305452
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|76018012|gb|DT945182.1|DT945182
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|71427887|gb|DR808937.1|DR808937
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|32799514|gb|CD951750.1|CD951750
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAEST: gi|20208081|gb|BQ134170.1|BQ134170
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTA
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|32809691|gb|CD961925.1|CD961925
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAEST: gi|211199933|gb|FL305444.1|FL305444
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTA
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGWATTCCAGCTAGCACTATTNTAAGAATCAGAGGAAAGAAAATCCTTTEST: gi|211199938|gb|FL305449.1|FL305449
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATT-TAAGAATCAGAGGAAAGAAAATC-TTT
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|26456204|gb|CA827787.1|CA827787
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|91052665|gb|EB163083.1|EB163083
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTCEST: gi|71317611|gb|DR795553.1|DR795553
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
EST: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAG GAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
genomic: TGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattcta ... tattgcgtagGAAGAATTCCAGCTAGCACTATTTAAGAATCAGAGGAAAGAAAATCTTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCGTTAGTGAGGTTGAGGCTCTATTCGAGCTGTTCAAGAGCATAAGTGGTTCGGTGATTGATGATGGCCTGATCAACAAGgtatattctattggtcgcctctgtattccttatcatattgccagctttgggtatgaacgtcaaatatgctcagtagccatgtcatcgttagctctccttg
- - - - - - - - - - - - - - - - - - - AGAGCA