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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaacttctgtctcatcttgctattataagcgatctgatattgcttcttttatgtatttaaattaagatcatttttaaaaattgtaattgtgttag...

Basic information

species Zea mays
transcript GRMZM2G107106_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868981_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 5'ss of exon 7
TGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaacttctgtctcatcttgctattataag---cgatctg--atattgcttcttttatgtatttaaattaagatcatttttaaaaattgtaattgtgttag
||||||||||||| | || || |||||| | ||||| |||||||  || || ||||||||||| |||||||||||||| ||||| ||||||| |||||||||   ||| |     ||  |  | ||  |  |||   | | ||    |||| || ||  ||  | | | || ||   |  ||| || ||||   || |  ||   
TGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgt--acaattctccacttcttgtacttgtgcaagttcccacctattgtattactactactaaat-tatgaaatatctttctttctataaatctaaaattggtc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28576016|gb|CB281908.1|CB281908
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|29543972|gb|CB604352.1|CB604352
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA