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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgctctggctccgccgctaagttgtctcttgtcgcaccctacgtatctaagctgcatctgagtggatttcccattggtgggggacaataaacggtgttctcag

Basic information

species Zea mays
transcript GRMZM2G107106_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107106_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g41010.3 (Oryza sativa), 5'ss of exon 2
GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgctctggctccgccgctaagttgtctcttgtcgcaccctacgtatctaagctgcatctgagtggatttcc--cattgg--tgggggacaataaacggtgttctcag
|||||||  || ||||| || || || ||||| |||||||||||||||||||||||  | | | ||   |||  ||   |||  |      ||| | | ||||||||||||||| ||| || |    ||||  |||  ||| |   || |         
GTCGACAACCGTAGCCAATCTGCTGGAAAGCGTGCCCGCACCGACGgtaggtcgcttcgccgcggcgattaacctgcggctttcc----tttac-tgtttaagctgcatctgaggggaatttcatttttggtatggatgacgactcacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211112037|gb|FL390926.1|FL390926
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|87157624|gb|DY402413.1|DY402413
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|71765408|gb|DR963345.1|DR963345
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|26559761|gb|CA831996.1|CA831996
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|26559278|gb|CA831513.1|CA831513
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|71439462|gb|DR820512.1|DR820512
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|74243877|gb|DT651791.1|DT651791
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|74238077|gb|DT645991.1|DT645991
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|211157842|gb|FL370480.1|FL370480
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|148973713|gb|EE024841.2|EE024841
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|71439479|gb|DR820529.1|DR820529
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|31353283|gb|CD437640.1|CD437640
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|211431782|gb|FL408913.1|FL408913
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|37418046|gb|CF646683.1|CF646683
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|211019422|gb|FL374992.1|FL374992
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|37417359|gb|CF646332.1|CF646332
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|87157437|gb|DY402226.1|DY402226
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|211487436|gb|FL377864.1|FL377864
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|22542254|gb|BU092692.1|BU092692
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|22819789|gb|BU499879.1|BU499879
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCGCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|71313389|gb|DR793245.1|DR793245
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|71446967|gb|DR828017.1|DR828017
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|148947916|gb|EC893413.2|EC893413
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT
EST: gi|78115667|gb|DV534055.1|DV534055
EST:     GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACG                         GCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCGACT
genomic: GTCGACAGGCGCAGCCAGTCCGCCGGGAAGCGCGCCCGCACCGACGgtaggtcgct ... gtgttctcagGCAGCCGGCGTGAGGACGACTGGGTTTGCCCCAGCTGCAAGAACGTCAACT