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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTCCTTATACATCAAGGAAAGGTGCTCAGCGATGACACCACATTAGAGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctacttgtttgtttttctggttgacacatggcaattcacgagtatgacttgagatgataagaaagttattgccaaaaccaaatatgaataactgt...

Basic information

species Zea mays
transcript GRMZM2G105772_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|109179157|gb|EC379841.1|EC379841
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414766|gb|FL112972.1|FL112972
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|148969759|gb|EE020640.2|EE020640
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|149051783|gb|EE155908.2|EE155908
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|60396086|gb|DN228955.1|DN228955
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|148943103|gb|EC888159.2|EC888159
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414777|gb|FL112983.1|FL112983
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGAACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGA-CAACTGCGAATCAG
EST: gi|211414771|gb|FL112977.1|FL112977
EST:     AGGAAAATCAAGTGACTGAGAATAATKTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAGGCA
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAGGCA
EST: gi|9732269|gb|BE511021.1|BE511021
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|78118533|gb|DV536917.1|DV536917
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|148991633|gb|EE033168.2|EE033168
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|91054260|gb|EB164678.1|EB164678
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211412225|gb|FL112969.1|FL112969
EST:     AGGAAAATCAAGTGACTGAGAATAATTTMCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211417314|gb|FL112986.1|FL112986
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414769|gb|FL112975.1|FL112975
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414779|gb|FL112985.1|FL112985
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211412224|gb|FL112968.1|FL112968
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414768|gb|FL112974.1|FL112974
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414765|gb|FL112971.1|FL112971
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATTCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCAT-CAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|21843204|gb|BQ703785.1|BQ703785
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|78081266|gb|DV509678.1|DV509678
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACGG                         AACAAGGGATCAT
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCAT
EST: gi|211417315|gb|FL112987.1|FL112987
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|91876143|gb|EB406100.1|EB406100
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414778|gb|FL112984.1|FL112984
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414775|gb|FL112981.1|FL112981
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414770|gb|FL112976.1|FL112976
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|32910960|gb|CF015772.1|CF015772
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|74240960|gb|DT648874.1|DT648874
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414774|gb|FL112980.1|FL112980
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|32861117|gb|CF000799.1|CF000799
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414767|gb|FL112973.1|FL112973
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|76011555|gb|DT938725.1|DT938725
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|148956696|gb|EC902566.2|EC902566
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211414773|gb|FL112979.1|FL112979
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211412220|gb|FL112964.1|FL112964
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|149001065|gb|EE038319.2|EE038319
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|91057192|gb|EB167610.1|EB167610
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|91878897|gb|EB408854.1|EB408854
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|149096952|gb|EE182751.2|EE182751
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
EST: gi|211412226|gb|FL112970.1|FL112970
EST:     AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAG                         AACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG
genomic: AGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 197

ACAAGTCCTTATACATCAAGGAAAGGTGCTCAGCGATGACACCACATTAGAGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 140

ACAAGTCCTTATACATCAAGGAAAGGTGCTCAGCGATGACACCACATTAGAGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 128

ACAAGTCCTTATACATCAAGGAAAGGTGCTCAGCGATGACACCACATTAGAGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 105

ACAAGTCCTTATACATCAAGGAAAGGTGCTCAGCGATGACACCACATTAGAGGAAAATCAAGTGACTGAGAATAATTTCCTTGTTATAATGCTCAGACAGgtagcctact ... cctttcacagAACAAGGGATCATCAAGTGCAGCACCGGCTAAGACAACTGCGAATCAG