1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGTACCAGCTGTCCATCGGCGCCGTGTGCGGGCTGTCGTGGCCGGCGGACCGGCTGGTGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAGgtatactagcttgcgtttcgccagagattttttttttctctttactgctgctaatcatgtacctgtgcgtaatgcattagcatctgcagcagcgttatct...
species | Zea mays |
transcript | GRMZM2G105631_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCGGCTGGTGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAG GAGATGGTGCGGATGGAGTGCGAGCGGTGGGCTCGGAAGGGGATCAACATAEST: gi|101389269|gb|EB816589.1|EB816589
genomic: ACCGGCTGGTGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAGgtatactagc ... tgatgagcagGAGATGGTGCGGATGGAGTGCGAGCGGTGGGCTCGGAAGGGGATCAACATA
EST: ACCGGCTGGTGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAG GAGATGGTGCGGATGGAGTGCGAGCGGTGGGCTCGGAAGGGGATCAACATAEST: gi|166500462|gb|EG148234.1|EG148234
genomic: ACCGGCTGGTGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAGgtatactagc ... tgatgagcagGAGATGGTGCGGATGGAGTGCGAGCGGTGGGCTCGGAAGGGGATCAACATA
EST: TGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAG GAGATGGTGCGGATGGAGTGCGAGCGGTGGGCTCGGAAGGGGATCAACATA
genomic: TGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAGgtatactagc ... tgatgagcagGAGATGGTGCGGATGGAGTGCGAGCGGTGGGCTCGGAAGGGGATCAACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTACCAGCTGTCCATCGGCGCCGTGTGCGGGCTGTCGTGGCCGGCGGACCGGCTGGTGGTGCAGGTGCTCGACGACTCCACGGACGAAGTGATTAAGgtatactagcttgcgtttcgccagagattttttttttctctttactgctgctaatcatgtacctgtgcgtaatgcattagcatctgcagcagcgttatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG