Sequence
atgc intronic sequence ATGC exonic sequenceCAGACTCACCAAAACCGTGGGCAAGACTTTACGAAGGGAAAGATAGCACTCCCACGAAGAAAAAGTGCTGCAACTGCAGGAACTCCAGATGTTTGAAGTTgtaagtcaggttctacccttagcttgagaagaataaaatattgcaaaggacgttttcacatgtggatagtgttctccttttatcgatatggattctttga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G104246_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55580.2 (Oryza sativa), 5'ss of exon 2
CAGACTCACCAAA---ACCGTGGGCAAGACTTTACGAAGGGAAAGATAGCACTCCCACGAAGAAAAAGTGCTGCAACTGCAGGAACTCCAGATGTTTGAAGTTgtaagtcaggttctac-ccttagcttgagaagaataaaatattgcaaaggacgttttcacatgtggatagtgttctccttttatcgatatggattctttga---
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---AGTCACCAAAGCCACCACGGGCACGGCTTTATGAAGGGAAAGATGGCACCCCGACAAAGAAGAAGTGCTGCAACTGCAAGCACTCCAAATGTTTGAAGTTgtaagtcagattacatgccttagcttgaaaacggtgcaatgttgcaactggagtacccttctgagta----actctagtctggataacgttggatccaaaagagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87156420|gb|DY401209.1|DY401209EST: CCCACGAAGAAAAAGTGCTGCAACTGCAGGAACTCCAGATGTTTGAAGTT ATACTGTGAATGCTTCGCTTCTGGTACTCACTGTGATGGTTGCAACTGCAC
genomic: CCCACGAAGAAAAAGTGCTGCAACTGCAGGAACTCCAGATGTTTGAAGTTgtaagtcagg ... ttccttacagATACTGTGAATGCTTCGCTTCTGGTACTCACTGTGATGGTTGCAACTGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGACTCACCAAAACCGTGGGCAAGACTTTACGAAGGGAAAGATAGCACTCCCACGAAGAAAAAGTGCTGCAACTGCAGGAACTCCAGATGTTTGAAGTTgtaagtcaggttctacccttagcttgagaagaataaaatattgcaaaggacgttttcacatgtggatagtgttctccttttatcgatatggattctttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaataa