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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGAgtatgccatggttcatgaatttttacacgccccttgagatgtttggtttgtcttttgagattttcttttcaaacag

Basic information

species Zea mays
transcript GRMZM2G104147_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104147_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 8
GACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGAgtatgccatggttcatgaatttttacacgccccttgagatgtttggtttgtct--tttgagattttcttttcaaacag
|| |  |||||||||||||||||||| || ||| ||||||| ||  |||| ||||| |||||||| ||||| || ||||||||||| || |||||||| |||||||||   |   | | |||  |||    | | || |    |   |  ||   | | |     | ||| |||| ||
GATCGACAAAATCCAACACAAATTGTCACGGAGCTGTGTGGTTTTGTGACCATCCTTTCTGGGACATTTCTCCTCCACAAGACAAAGGACATGACTGACAgtatgccacaatctgtcattttacacattttcatagatactactatgtcatcatgtctaatgagatttttccaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149005114|gb|EE039644.2|EE039644
EST:     TATCCTATTTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGA                         GTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGAgtatgccatg ... tttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG
EST: gi|78104713|gb|DV523131.1|DV523131
EST:     TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGA                         GTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG
genomic: TATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGACTGAGAgtatgccatg ... tttcaaacagGTCCTGGACAATGTTTGTCCACACGGCGGTCAAAGCATGCTAGTCAGAATG