1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCGCCCCATGGCTCTGAGGTCTTCATTGGTGGCCTGCCCCGCGACATCACGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAGgtcagtttcacgcgacacacgaaccctgccgtttcctcttaccatcagcttgttacatgcatgagggttgtaatgtgggtctctgtgggggtcaatggaatggcag
species | Zea mays |
transcript | GRMZM2G103430_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAG GTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTTEST: gi|211538187|gb|FL238623.1|FL238623
genomic: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAGgtcagtttca ... ggaatggcagGTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTT
EST: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAG GTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTTEST: gi|21809456|gb|BQ667774.1|BQ667774
genomic: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAGgtcagtttca ... ggaatggcagGTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTT
EST: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAG GTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTTEST: gi|211124642|gb|FL376727.1|FL376727
genomic: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAGgtcagtttca ... ggaatggcagGTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTT
EST: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAG GTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTT
genomic: CGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAGgtcagtttca ... ggaatggcagGTGAGGTTGACCAAGGATAAGGACACAAAGGAGAACAAGGGGTTCGCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCCCATGGCTCTGAGGTCTTCATTGGTGGCCTGCCCCGCGACATCACGGAGGAGGACCTCCGTGAGCTGTGCGAGCCGTTGGGAGAAATATATGAGgtcagtttcacgcgacacacgaaccctgccgtttcctcttaccatcagcttgttacatgcatgagggttgtaatgtgggtctctgtgggggtcaatggaatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA