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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACCCGTGCAGGAAGGGCGTCTGGTCAGAGTCGTCCGGAATAAACGCGTCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttcttcactcttactcggttactcccgtttacccccctttgttacggacgcttctgtgagcatgtgattgatgtgtgggtctggaatatattattgatgcag

Basic information

species Zea mays
transcript GRMZM2G103033_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37425182|gb|CF650328.1|CF650328
EST:     TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCT                         AAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
genomic: TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttc ... attgatgcagAAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
EST: gi|211450628|gb|FL309615.1|FL309615
EST:     TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCT                         AAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
genomic: TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttc ... attgatgcagAAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
EST: gi|211178693|gb|FL329875.1|FL329875
EST:     TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCT                         AAATGTGAGTGGGCACAGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
genomic: TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttc ... attgatgcagAAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
EST: gi|211258292|gb|FL356006.1|FL356006
EST:     TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCT                         AAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
genomic: TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttc ... attgatgcagAAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
EST: gi|211265619|gb|FL356060.1|FL356060
EST:     TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCT                         AAATGTGAGTGGGCACAGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
genomic: TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttc ... attgatgcagAAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
EST: gi|211413975|gb|FL312351.1|FL312351
EST:     TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCT                         AAATGTGAGTGGGCACAGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA
genomic: TCCGTCGAATGCAACTGCCTCCCCTCAAGGGTGTGCCGCATCACAAGCCTgtgcgtcttc ... attgatgcagAAATGTGAGTGGGCACGGGAACATCTCGGCGATCCCGCGGGAGCTATTCAA