1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGAGACCTGCGTCAGAGACAAGGCTGTGGAATCACTTTGTCAGATAGGAGCACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcactacttttattgtgctataggtttcaatgttttcttatttactctgacagaaaaagaagtatccacaccaatttaagctaaatatgtggtt...
species | Zea mays |
transcript | GRMZM2G102858_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAG AGGTTGGCGGTAGGEST: gi|60340984|gb|DN207957.1|DN207957
genomic: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcac ... atcaactcagAGGTTGGCGGTAGG
EST: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAG AGGTTGGCGGTAGGTGAGTGGTT-ACAGEST: gi|211350003|gb|FL351953.1|FL351953
genomic: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcac ... atcaactcagAGGTTGGCGGTAGGTGAGTGGTTTACAG
EST: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAG AGGTTGGCGGTAGGTGAGTGGTTCACAGCTCGAGTTTCTTCATGTGGCCTTEST: gi|149079805|gb|EE168802.2|EE168802
genomic: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcac ... atcaactcagAGGTTGGCGGTAGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGTGGCCTT
EST: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAG AGGTTGGCGGTAGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGTGGCCTTEST: gi|32866258|gb|CF005940.1|CF005940
genomic: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcac ... atcaactcagAGGTTGGCGGTAGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGTGGCCTT
EST: GTGGACTGGTTTGCCCATGTCGTAAAG AGGTTGGCGGTAGGTGAGTGGTTCACCAGCTCGAGTTTCTTCATGTGGCCTEST: gi|148969766|gb|EE020648.2|EE020648
genomic: GTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcac ... atcaactcagAGGTTGGCGGTAGGTGAGTGGTTTA-CAGCTCGAGTTTCTTCATGTGGCCT
EST: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAG AGGTTGGCGGTAGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGTGGCCTT
genomic: CACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcac ... atcaactcagAGGTTGGCGGTAGGTGAGTGGTTTACAGCTCGAGTTTCTTCATGTGGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGACCTGCGTCAGAGACAAGGCTGTGGAATCACTTTGTCAGATAGGAGCACAGATGAAGGAAAATGATATTGTGGACTGGTTTGCCCATGTCGTAAAGgtatgagcactacttttattgtgctataggtttcaatgttttcttatttactctgacagaaaaagaagtatccacaccaatttaagctaaatatgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagaa