Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttccttgatttcatcctctttgcttaacttcttgcgaggtcatctgtagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccacattgactttccagttatggtacctgatcccctttgttctaattttgcag

Basic information

species Zea mays
transcript GRMZM2G102829_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102829_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g02700.1 (Oryza sativa), 5'ss of exon 2
GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgt---tccttgatttcatcctctttgcttaacttcttgcgaggtcatctg-tagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccacattgactttccagttatggtacctgatcccctttgttctaattttgcag
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| || ||||||| |||||| ||||| ||||| | |    ||    ||  |  || |||  | | ||| ||     ||  | ||  |   ||  |   |||  ||  |                                                                                             
GCTCAACTTCACTCCTATCAATGGAAAACCTATCAGGATCATGTATTCTAACCGTGACCCCAGCTTGCGCAAGAGTGGCACAGCAAATATTTTTATCAAGgtatctgtgcccactcttgaaagctattttttcatcttttttttttgtagtttgacatcctgacttctcttttttcag---------------------------------------------------------------------------------------------

upper sequence: GRMZM2G102829_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0063g00070.t01 (Vitis vinifera), 5'ss of exon 3
GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttccttgatttcatcctctttgcttaacttcttgcgaggtcatctgtagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccacattgactttccagttatggtacctgatcccctttgttctaattttgcag
| | || ||||||||| ||||||||||||| || ||||| ||||||||  | |||||||||||    |||||||| || || |||||||||||||||||||| |      |   ||     | | ||||||| | | || |   |||    |||||||       ||  |  ||  |     |||   |   |||||     | ||   ||| ||    |  |||| ||||                                    
GTTGAATTTCACTCCTCTCAATGGAAAGCCAATTAGGATTATGTATTCCCATCGTGACCCTAGTATCCGCAAAAGTGGAACTGGAAATATATTTATTAAGgtat---taatatcttttggttttgtgcttaa-tgcatgtggtctcact--tagattgaaa-gggtttttcaggtttcatttgttttgtttcctgac---caagttaacatatgct--ttgaacttgccag------------------------------------

upper sequence: GRMZM2G102829_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g00210.t01 (Vitis vinifera), 5'ss of exon 2
GCTTAACTTCACTCCTATCAATGGAAAGCCTATCAGGATCATGTATTCTAACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttccttgatttcatcctctttgcttaacttcttgcgaggtcatctgtagattgcgtcaacttccttgggactagaaggttgcataagctgacttctgaatttttatacgccaca----ttgactttccagttatggtacctgatcccctttgttctaattttgcag------
| | |||||||||||| ||||||| ||||| || ||||| |||||||||   || || |||||    || | ||| || || |  ||||| ||||| |||||     |  | ||||  |  |  || ||    |  ||  ||     |   | ||||   |   ||    |||    | |   || | | |  |   ||      |   | |           || | ||     || |  |   |  |    | |||| | ||||||         
GTTGAACTTCACTCCTCTCAATGGGAAGCCAATTAGGATTATGTATTCTTTTCGAGATCCTAGTATTCGTAGAAGTGGGACCGCTAATATTTTTATCAAGgta----ctataattttgttgttgtttct----tctttatgattatgtacttggatt--cttgcctctggtggataaaaagattttctttaattctttttccctctccgacagattctgatatttaatttctttcttcttttgttttttgttttatgtttttattttgtgttggaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18963395|gb|BM660411.1|BM660411
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|18964519|gb|BM661053.1|BM661053
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|76287722|gb|DV027290.1|DV027290
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|19770490|gb|BQ035211.1|BQ035211
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|87152528|gb|DY397317.1|DY397317
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|18964518|gb|BM661052.1|BM661052
EST:     ACCG-GACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|91872653|gb|EB402610.1|EB402610
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|94478793|gb|EB707751.1|EB707751
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|19770298|gb|BQ035019.1|BQ035019
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|50339950|gb|CO535076.1|CO535076
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|60291829|gb|DN190068.1|DN190068
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|89247208|gb|DY618994.1|DY618994
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|71757068|gb|DR955005.1|DR955005
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|50339951|gb|CO535077.1|CO535077
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|91872652|gb|EB402609.1|EB402609
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|60400258|gb|DN233065.1|DN233065
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|61119220|gb|DN560181.1|DN560181
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|30705350|gb|CD058755.1|CD058755
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|20300457|gb|BQ163400.1|BQ163400
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|89249056|gb|DY620842.1|DY620842
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|76291689|gb|DV031257.1|DV031257
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
EST: gi|78119331|gb|DV537715.1|DV537715
EST:     ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAG                         AATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA
genomic: ACCGTGACCCTAGCTCGCGCAAAAGCGGCACAGGAAATATATTTATTAAGgtgtgttcct ... aattttgcagAATCTTGATAAGTCAATAGACAACAAAGCTTTATATGACACATTCTGTGCA