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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaacactgacattgctggtgttacttattaaaattagaagtcacatcatatattgaacatttatgtcaatcaatagtacaaaaatgtgggtca...

Basic information

species Zea mays
transcript GRMZM2G102088_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102088_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g51950.1 (Oryza sativa), 5'ss of exon 2
GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaacac--tgacattgctggtgttacttattaaaattagaagtcacatcatatattgaacatttatgtcaatcaatagtacaaaaatgtgggtca-
| |||||||| || |||||||| ||||||||||| ||  |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |     ||     |  |  || |||  | | |||   || |  ||       |  ||    | |   | | |  ||  | ||| | | |   
GCGATAAATCGATTAAGATAGCAGACTTTGGAGTTGCCAGGATTGAAGTCAAAACCGAGGGGATGACACCTGAAACAGGAACCTATCGTTGGATGGCCCCgtaagttgaataaaacaactacattaatactatttaccata-ttatctgttagttctagccgcgtgcaacactttattttagt--taagagaattttgtttgg

upper sequence: GRMZM2G102088_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G03010.2 (Glycine max), 5'ss of exon 3
GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaac-actgacattgctggtgttacttattaaaat-tagaagtcacatcatatattgaacatttatgtcaatcaatagtacaaaaatgtgggtca
|||| || || || || || |||||||||||||| ||||| ||||| ||  ||||||| || ||||||||||| || ||||| || ||||||||||| ||||||| | |    ||    |   |  |  ||||||| |   | ||    |   | | | | ||    | | || |   |  | ||       ||   ||| |
GTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCTCGTATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCgtaagatcatttgctattctctttttttatacttataattttatatgcattctagcttcttttttggaatgatttt--tggagagcttctcgattatggtta

upper sequence: GRMZM2G102088_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G36540.2 (Glycine max), 5'ss of exon 2
GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaag-ttgaacactgacattgctggtgttacttat-taaaattagaag-----tcacatcatatattgaac-atttatgtcaatcaatagtacaaaaatgtgggtca
|||| || || || || || |||||||||||||| || || ||||| ||  ||||||| || ||||||||||| || ||||| || ||||||||||| ||||||| |      |||   |  ||  |  || |||| ||   ||| | |     |  | |||| | | |||  |||| ||   | |     ||  |   |        
GTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCCCGTATTGAGGTGCAAACTGAAGGAATGACACCTGAGACTGGAACATACCGTTGGATGGCTCCgtaagatcttttgctgttctctctttttatatttatatagttttatatgcattctagcttcatttttggaatgatttttggagagcttctctattatggt--------

upper sequence: GRMZM2G102088_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT4G31170.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaacactgacattgctggtgttacttat--taaaattagaagtcacatcatatattgaacatttatgtc-aatcaata-gtacaaaaatgtgggtca------
 ||||   || |||||||| ||||| ||||| || ||  | ||||||||  |||| || ||||||||||| || || ||||| ||  | ||||||||||||||||||||| |   |  | | |     | ||| |  |    |||  |  |  || |||| |     | | || |  |  || ||  | |    || | | ||       
CTGATCGGTCCATCAAGATTGCTGATTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTACAGATGGATGGCACCgtaagttgaataaatatctcgttttccatccttgtcttgtccttaataaccttat-atatctctgcaagtcatatttagacactatattcccttattttgatcgatgcag

upper sequence: GRMZM2G102088_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT4G31170.4 (Arabidopsis thaliana), 5'ss of exon 2
GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaacactgacattgctggtgttacttat--taaaattagaagtcacatcatatattgaacatttatgtcaatcaatagtacaaaaatgtgggtca-
 ||||   || |||||||| ||||| ||||| || ||  | ||||||||  |||| || ||||||||||| || || ||||| ||  | ||||||||||||||||||||| |   |  | | |     | ||| |  |    |||  |  |  || |||| |     | | || |  |   | | || |      |   |   
CTGATCGGTCCATCAAGATTGCTGATTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTACAGATGGATGGCACCgtaagttgaataaatatctcgttttccatccttgtcttgtccttaataaccttat-atatctctgcaagtcatattta--gacactatattcccttattttga

upper sequence: GRMZM2G102088_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S120_103V6.1 (Physcomitrella patens), 5'ss of exon 2
GTGATAAATCTATCAAGATAGCTGACTTTGGAGTAGCTCGGATTGAAGTAAAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaacactgacattgctggtgttacttattaaaattagaagtcacatcatatattgaacatttatgtcaatcaata-gtacaaaaatgtgggtca-
  || ||||| || ||||| || || ||||| |  ||| |||| |||||  ||  |||||| ||||| || ||||||||||||||||| |||||||| |||| |||     ||||     | | |||||   ||||    || |   || | |||    | | |||| | | |   ||  |  | |  |  || |   ||  
CGGACAAATCAATTAAGATTGCAGATTTTGGTGCTGCTAGGATAGAAGTGCAAGTTGAGGGCATGACTCCAGAAACGGGAACCTATCGATGGATGGCTCCgtgagtatctaactgttgacgtttgtgttttgtattcttttttgttttc-cctcacgc-tggtacatgtttttttttctgtgtgaatgatcatatcaatcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148982646|gb|EE028447.2|EE028447
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|71762094|gb|DR960031.1|DR960031
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|116819043|gb|EC862128.1|EC862128
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|31361978|gb|CD446335.1|CD446335
EST:     AAAACTGAGGGGATGACACTTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|6012220|gb|AW061762.1|AW061762
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTACCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|47962131|gb|CN844840.1|CN844840
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGTACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|211219776|gb|FL407448.1|FL407448
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|32866602|gb|CF006284.1|CF006284
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGTTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|32850190|gb|CD989871.1|CD989871
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGTTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT
EST: gi|44681913|gb|CK786961.1|CK786961
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACGGGGCCATATGACCAAAAAGTTGATGTCTACAGCT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGG-CCATATGACCAAAAAGTTGATGTCTACAGCT
EST: gi|32945076|gb|CF049895.1|CF049895
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATG
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATG
EST: gi|32866890|gb|CF006572.1|CF006572
EST:     AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACC                         AGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGTTT
genomic: AAAACTGAGGGGATGACACCTGAAACGGGAACCTATCGTTGGATGGCACCgtaagttgaa ... aatcttgcagAGAGATGATTCAGCACAGGCCATATGACCAAAAAGTTGATGTCTACAGCTT