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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatcatctgtctcgggccatttttcccatgaacaatctgatcgacgtttttttgtgcctaggatcccaatagataaattcgggcacttgtccac...

Basic information

species Zea mays
transcript GRMZM2G101480_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101480_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 2
TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatcatctgtctcgggccatttttcccatgaacaatctgatcgacgttttt-ttgtgcctaggatcccaatagataaattcgggcacttgtccac
  |||||||| |  ||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||| ||| |||||||||  ||| ||   | ||   ||| ||     | ||| | || ||   | ||||  ||| | || |                                 
ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGgctggatgacgacaccgagagccttgcccgtgagtcatcttcaagcccgtatcatcttatttgttaacta-ctaataatctttttggttgcgacttgcgag-----------------------------

upper sequence: GRMZM2G101480_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g27850.1 (Oryza sativa), 5'ss of exon 2
TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatcatctgtctcgggccatttttcccatgaacaatctgatcgacgttttt-ttgtgcctaggatcccaatagataaattcgggcacttgtccac
  |||||||| |  ||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||| ||| |||||||||  ||| ||   | ||   ||| ||     | ||| | || ||   | ||||  ||| | || |    |  ||  ||       |  |   | ||| 
ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGGCTGGATGACGACACCGAGAGCCTTGCCCgtgagtcatcttcaagcccgtatcatcttatttgttaacta-ctaataatctttttggttgcgacttgcgagcttatttatcctaaaagttatacgaccat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211150712|gb|FL424943.1|FL424943
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGAC-TGAAGAAAAATCTCATGC
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGC
EST: gi|211199840|gb|FL414699.1|FL414699
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211134616|gb|FL369498.1|FL369498
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|87154044|gb|DY398833.1|DY398833
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|14701255|gb|BI233673.1|BI233673
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211297066|gb|FL414882.1|FL414882
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211171174|gb|FL157590.1|FL157590
EST:     CACATCCCTCAACACCAAGCGCYTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATC
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATC
EST: gi|211426583|gb|FL408876.1|FL408876
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGG
EST: gi|211221428|gb|FL386095.1|FL386095
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|51592547|gb|CV071693.1|CV071693
EST:     CACATCCCCCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211508672|gb|FL378338.1|FL378338
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG