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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatcatctgtctcgggccatttttcccatgaacaatctgatcgacgtttttttgtgcctaggatcccaatagataaattcgggcacttgtccac...

Basic information

species Zea mays
transcript GRMZM2G101480_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101480_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 5'ss of exon 2
TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatcatctgtctcgggccatttttcccatgaacaatctgatcgacgttttt-ttgtgcctaggatcccaatagataaattcgggcacttgtccac
  |||||||| |  ||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||| ||| |||||||||  ||| ||   | ||   ||| ||     | ||| | || ||   | ||||  ||| | || |                                 
ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGgctggatgacgacaccgagagccttgcccgtgagtcatcttcaagcccgtatcatcttatttgttaacta-ctaataatctttttggttgcgacttgcgag-----------------------------

upper sequence: GRMZM2G101480_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g27850.1 (Oryza sativa), 5'ss of exon 2
TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatcatctgtctcgggccatttttcccatgaacaatctgatcgacgttttt-ttgtgcctaggatcccaatagataaattcgggcacttgtccac
  |||||||| |  ||||||||||||||||| ||||||||||||||||||||||| || || |||||||| |||| ||| |||||||||  ||| ||   | ||   ||| ||     | ||| | || ||   | ||||  ||| | || |    |  ||  ||       |  |   | ||| 
ATAACGCTGGAACAAACAAGGCGGCGTCCAGTGGCACATCCCTCAACACCAAGCGGCTGGATGACGACACCGAGAGCCTTGCCCgtgagtcatcttcaagcccgtatcatcttatttgttaacta-ctaataatctttttggttgcgacttgcgagcttatttatcctaaaagttatacgaccat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211102751|gb|FL409166.1|FL409166
EST:     CACATCCCTCAACACCAAGCGCCTCGACGGCGACACATTGTACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|71595755|gb|DR906506.1|DR906506
EST:     CACATCCCTCAACACCAGGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|31558212|gb|CD527424.1|CD527424
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|31362533|gb|CD446890.1|CD446890
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211150712|gb|FL424943.1|FL424943
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGAC-TGAAGAAAAATCTCATGC
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGC
EST: gi|211199840|gb|FL414699.1|FL414699
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|148943030|gb|EC888080.2|EC888080
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|18176992|gb|BM378202.1|BM378202
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|13198703|gb|BG354505.1|BG354505
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|113701846|gb|EE679350.1|EE679350
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60356188|gb|DN223161.1|DN223161
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|148938265|gb|EC882560.2|EC882560
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|30087746|gb|CB885952.1|CB885952
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60340588|gb|DN207561.1|DN207561
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|110200662|gb|EC882559.1|EC882559
EST:     ACATCCCTCAACACCAAAGCGCCTCGACGGCGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATTTCATGCAAGCAAGGCTCG
genomic: ACATCCCTCAACACC-AAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|71306599|gb|DR789460.1|DR789460
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|78025685|gb|DV494072.1|DV494072
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67010822|gb|CO439571.1|CO439571
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|74035357|gb|DT535846.1|DT535846
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211169505|gb|FL157588.1|FL157588
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|78025602|gb|DV493989.1|DV493989
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67024898|gb|CO453647.1|CO453647
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|32923241|gb|CF028053.1|CF028053
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60338996|gb|DN205969.1|DN205969
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60349014|gb|DN215987.1|DN215987
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|32921664|gb|CF026476.1|CF026476
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60350229|gb|DN217202.1|DN217202
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|71431138|gb|DR812188.1|DR812188
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67019598|gb|CO448347.1|CO448347
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|51592532|gb|CV071678.1|CV071678
EST:     CACATCCCCCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211297066|gb|FL414882.1|FL414882
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|8577422|gb|BE130059.1|BE130059
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60358790|gb|DN225763.1|DN225763
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|71306597|gb|DR789459.1|DR789459
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|32921064|gb|CF025876.1|CF025876
EST:     ACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: ACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67021700|gb|CO450449.1|CO450449
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211169503|gb|FL157586.1|FL157586
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|74035245|gb|DT535734.1|DT535734
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|21760114|gb|BQ635655.1|BQ635655
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211171174|gb|FL157590.1|FL157590
EST:     CACATCCCTCAACACCAAGCGCYTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATC
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATC
EST: gi|211508672|gb|FL378338.1|FL378338
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|12971089|gb|BG267309.1|BG267309
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|5108299|gb|AI740012.1|AI740012
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|91868112|gb|EB399922.1|EB399922
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|13558840|gb|BG550195.1|BG550195
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211134616|gb|FL369498.1|FL369498
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|16927526|gb|BM080595.1|BM080595
EST:     AGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: AGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|31349676|gb|CD434033.1|CD434033
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211221428|gb|FL386095.1|FL386095
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211089795|gb|FL379373.1|FL379373
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60342198|gb|DN209171.1|DN209171
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211169506|gb|FL157589.1|FL157589
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGATAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|32915336|gb|CF020148.1|CF020148
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|9952825|gb|BE639408.1|BE639408
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|31250133|gb|CD219157.1|CD219157
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211426583|gb|FL408876.1|FL408876
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGG
EST: gi|60340907|gb|DN207880.1|DN207880
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|37393065|gb|CF633789.1|CF633789
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|14701255|gb|BI233673.1|BI233673
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60347583|gb|DN214556.1|DN214556
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|32920285|gb|CF025097.1|CF025097
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|76021145|gb|DT948315.1|DT948315
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67014211|gb|CO442960.1|CO442960
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|18179932|gb|BM381142.1|BM381142
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67012987|gb|CO441736.1|CO441736
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211089947|gb|FL388097.1|FL388097
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211171178|gb|FL157594.1|FL157594
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|67030264|gb|CO459013.1|CO459013
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211365691|gb|FL375168.1|FL375168
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|18180789|gb|BM381999.1|BM381999
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|60343038|gb|DN210011.1|DN210011
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|31558213|gb|CD527425.1|CD527425
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|51592547|gb|CV071693.1|CV071693
EST:     CACATCCCCCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTAG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|30087745|gb|CB885951.1|CB885951
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211171182|gb|FL157598.1|FL157598
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|211273072|gb|FL480779.1|FL480779
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|76021146|gb|DT948316.1|DT948316
EST:     CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
EST: gi|14203457|gb|BG837134.1|BG837134
EST:     CACATCCCTCAACACCAAGCGCCTCGACGATGACACAGAGAACCTCGCCC                         ATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG
genomic: CACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 493

TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 666

TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 713

TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 565

TCAACGCTGGTATGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACAGAGAACCTCGCCCgtgagcaatc ... cttatgctagATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGTTGACCCAGGCACAGCTTGCTCAG