Sequence
atgc intronic sequence ATGC exonic sequenceCCAGAAGAGATTCGCAAGACCTTCAACATCAAGAATGACTTCACCCCTGAGGAGGAAGAGGAGATCCGCAGGGAGAACCAGTGGGCCTTCGAGTAAGGAGgtgctggatctattgatgcctaagtttggtggtgtctactactatgtctactttatgttgtcctaatggttgtaagtattttgggagtcactttgcttgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G101446_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0038g02490.t01 (Vitis vinifera), 5'ss of exon 4
----CCAGAAGAGATTCGCAAGACCTTCAACATCAAGAATGACTTCACCCCTGAGGAGGAAGAGGAGATCCGCAGGGAGAACCAGTGGGCCTTCGAGTAAGGAGgtgctggatctattgatgcctaagtttggtggtgtctactactatgtctactttatgttgtcctaatggttgtaagtattttgggagtcactttgcttgc
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GACTGCGGAGGAAATTCGCAAGACACTCAACATCAAGAATGACCTCACTCCAGAGGAAGAGGAGGAGATCCGGAGAGAGAACCGATGGATATTTGATTAAggag----------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71431814|gb|DR812864.1|DR812864EST: TCCGCAGGGAGAACCAGTGGGCCTTCGAGTAAGGAG TCGAGGCCAATGCCCTAAGGCCCGGCCAGTGCTCTAAGGCCAGGTCATTGT
genomic: TCCGCAGGGAGAACCAGTGGGCCTTCGAGTAAGGAGgtgctggatc ... aaatttacagTCGAGGCCAATGCCCTAAGGCCCGGCCAGTGCTCTAAGGCCAGGTCATTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGAAGAGATTCGCAAGACCTTCAACATCAAGAATGACTTCACCCCTGAGGAGGAAGAGGAGATCCGCAGGGAGAACCAGTGGGCCTTCGAGTAAGGAGgtgctggatctattgatgcctaagtttggtggtgtctactactatgtctactttatgttgtcctaatggttgtaagtattttgggagtcactttgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG