1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACGTACGACAAGGAGCAGGACACCTTCCGCCACACGGTGCTCGTCGCCGCCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgttttctctctatcggatctgtcctggtttactcattttgaattggtgatggtgttacgggatccgtaatacagttttaagctgtcttctggtaa...
species | Zea mays |
transcript | GRMZM2G101413_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGCATTCCTGCTCGCGCTAATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|71332207|gb|DR803027.1|DR803027
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|91874972|gb|EB404929.1|EB404929
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|76014786|gb|DT941956.1|DT941956
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211065165|gb|FL369013.1|FL369013
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCEST: gi|71332206|gb|DR803026.1|DR803026
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATC
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|87157131|gb|DY401920.1|DY401920
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|101390410|gb|EB817139.1|EB817139
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: TCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|88753296|gb|DY537437.1|DY537437
genomic: TCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCGTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGTATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|113702315|gb|EE679819.1|EE679819
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211107241|gb|FL370796.1|FL370796
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211380145|gb|FL420167.1|FL420167
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCEST: gi|211215315|gb|FL417122.1|FL417122
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTC
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTTGGAG-CAGTGGCTATTCTCCCACAEST: gi|211199199|gb|FL385609.1|FL385609
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTT-GGAGGCAGTGGCTATTCTCCCACA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211009339|gb|FL418571.1|FL418571
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211288156|gb|FL392358.1|FL392358
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|71316815|gb|DR795095.1|DR795095
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|94473860|gb|EB702818.1|EB702818
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGGTCACCTTCCGCGAG ATATGCTGGGCATTTTEST: gi|76012114|gb|DT939284.1|DT939284
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTT
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211060163|gb|FL397358.1|FL397358
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|149082455|gb|EE171645.2|EE171645
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|50332292|gb|CO527418.1|CO527418
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211299206|gb|FL414893.1|FL414893
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211098010|gb|FL420461.1|FL420461
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTEST: gi|74243070|gb|DT650984.1|DT650984
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTT
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|67014344|gb|CO443093.1|CO443093
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211488630|gb|FL426433.1|FL426433
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATEST: gi|60358513|gb|DN225486.1|DN225486
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAAT
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|148943937|gb|EC889017.2|EC889017
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211163058|gb|FL403918.1|FL403918
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCWTTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCEST: gi|211209399|gb|FL384247.1|FL384247
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGC
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211119295|gb|FL407774.1|FL407774
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|76012125|gb|DT939295.1|DT939295
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|148990937|gb|EE032363.2|EE032363
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|101390412|gb|EB817140.1|EB817140
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAAEST: gi|211449466|gb|FL373066.1|FL373066
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAGGCAGTGGCTATTCTCCCACAA
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTTCAATCTATTEST: gi|211325768|gb|FL396595.1|FL396595
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTT-CAATCTATT
EST: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAG ATATGCTGGGCATTTTCAATCTATTTGGAG
genomic: CCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgtttt ... tcctttgcagATATGCTGGGCATTTTCAATCTATTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTACGACAAGGAGCAGGACACCTTCCGCCACACGGTGCTCGTCGCCGCCGCATTCCTGCTCGCGCTGATATTCCACGAGCGGTTCACCTTCCGCGAGgtaatgttttctctctatcggatctgtcctggtttactcattttgaattggtgatggtgttacgggatccgtaatacagttttaagctgtcttctggtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT