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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGTCACCGTGGCCGTCTGCATCGGCAACCTTGTCGCCGTGCTGCTCGTGCTCCGCTCCCTCACCGCCCCCGCTTCCTTCGCACCCACCGCTCCCAACCgtgagtggaatccctcgccatgtttacgccttcggtttacttcctttgatctgactaggtttgtttcag

Basic information

species Zea mays
transcript GRMZM2G101412_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101412_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g52410.1 (Oryza sativa), 5'ss of exon 1
---------CGCGTCACCGTGGCCGTCTGCATCGGCAACCTTGTCGCCGTGCTGCTCGTGCTCCGCTCCCTCACCGCCCCCGCTTCCTTCGCACCCACCGCTCCCAACCgtgagtggaatccc---tcgccatgtttacgccttcg--gtttacttcctttgatctgactaggtt--tgtttcag--------------
         ||| |||| || ||||||||| |||| ||||| ||||||| ||| |||||||||||||||||||||         ||| |||| |||||  | ||||| ||||||  ||||| |   ||||||| | | | |||| |   ||   ||  || ||||||| | |     ||| ||                
TCGTACCGGCGCATCACGGTAGCCGTCTGCCTCGGGAACCTCGTCGCCGCGCTCCTCGTGCTCCGCTCCCTCACC---------TCCCTCGCCCCCACACCGCCCAAACgtgagctgaatctcgcgtcgccatctctgcaccttggtccttgggtttattcgatctgattcgtgcgctgtatcgaactcttgtttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110193828|gb|EC875726.1|EC875726
EST:     GCTCCGCTCCCTCACCGCCCCCGCTTCCTTCGCACCCACCGCTCCCAACC                         GCGGGGAAGTGGTGCAGTACACGGAGGAGCAGATTAGGTGGGTGGAGGAGT
genomic: GCTCCGCTCCCTCACCGCCCCCGCTTCCTTCGCACCCACCGCTCCCAACCgtgagtggaa ... tttgtttcagGCGGGGAAGTGGTGCAGTACACGGAGGAGCAGATTAGGTGGGTGGAGGAGT
EST: gi|149070871|gb|EE159279.2|EE159279
EST:     GCTCCGCTCCCTCACCGCCCCCGCTTCCTTCGCACCCACCGCTCCCAACC                         GCGGGGAAGTGGTGCAGTACACGGAGGAGCAGATTAGGTGGGTGGAGGAGT
genomic: GCTCCGCTCCCTCACCGCCCCCGCTTCCTTCGCACCCACCGCTCCCAACCgtgagtggaa ... tttgtttcagGCGGGGAAGTGGTGCAGTACACGGAGGAGCAGATTAGGTGGGTGGAGGAGT