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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATATCTCAAGCAGTGCACGGGGAGAGTTACCAAGTTGATGAGTTTTCTCTAGAAATTTCACTACCGCCGGTTATAGCCGCCAATGAGCGTGCAGTTAGgtaatcatctctagctaaaaatatctgctccgtttatcctcttgctccattttttattggttactcatggagatatcattgtgttaatcatgtcagagtt...

Basic information

species Zea mays
transcript GRMZM2G101383_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101383_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g47380.1 (Oryza sativa), 5'ss of exon 2
TAATATCTCAAGCAGTGCACGGGGAGAGTTACCAAGTTGATGAGTTTTCTCTAGAAATTTCACTACCGCCGGTTATAGCCGCCAATGAGCGTGCAGTTAGgtaatcatctctagctaaaaatatctgctccg-tttatcctcttgctccatttttta-ttggttactcatggagatatcattgtgttaatcatgtcagagtt
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TTATATCTGAAGCAGTCCAGAGAGAGGGTCACCAAGTCGATGAGTTCTCCCTAGAAATTTCACTGCCTGCAGTTATAGCAGCTAATGATCGTGCCATTAGgtaaccatctgcacctaagaatttttgcctcacttttttatacagcaccatgaattggtttgtgactgaagggggtgccac-atattaatcatttttaaaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934800|gb|CF039612.1|CF039612
EST:     CTAGAAATTTCACTACCGCCGGTTATAGCCGCCAATGAGCGTGCAGTTAG                         ATTATATATGAAACAAAAATATGGCAATGAGAATTGGTTCAAGGACAAAAT
genomic: CTAGAAATTTCACTACCGCCGGTTATAGCCGCCAATGAGCGTGCAGTTAGgtaatcatct ... acctgaacagATTATATATGAAACAAAAATATGGCAATGAGAATTGGTTCAAGGACAAAAT
EST: gi|71432347|gb|DR813397.1|DR813397
EST:     CTAGAAATTTCACTACCGCCGGTTATAGCCGCCAATGAGCGTGCAGTTAG                         ATTATATATGAAACAAAAATATGGCAATGAGAATTGGTTCAAGGACAAAAT
genomic: CTAGAAATTTCACTACCGCCGGTTATAGCCGCCAATGAGCGTGCAGTTAGgtaatcatct ... acctgaacagATTATATATGAAACAAAAATATGGCAATGAGAATTGGTTCAAGGACAAAAT