Sequence
atgc intronic sequence ATGC exonic sequenceGCGAAGGGATCGCTTTGGGCTTCCAACACTACATACTGTCCTTGGGCACTGCTGTCATGATCCCCACGCTGCTGGTTCCTCTTATGGGTGGAAATGATgtgagcataccgtccttactcgtactcgtgtggtttcttgatcctgtttcgagttcctggctttcatcagcagtgttcgcatgaaacaaacaaaatgctg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G100484_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 5'ss of exon 3
GCGAAGGGATCGCTTTGGGCTTCCAACACTACATACTGTCCTTGGGCACTGCTGTCATGATCCCCACGCTGCTGGTTCCTCTTATGGGTGGAAATGATgtgagcataccgtcctt-----actcgtact---cgtgtggt----ttcttgatcctgtttcgagttcctggctttcatcagcagtgttcgcatgaaacaaacaaaatgctg-----------------------------------------
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GTGAAGCAATTGCTTTGGGCTTTCAGCATTACATTCTTTCCCTGGGCACTGCTGTGATGATCCCAACAATGCTGGTTCCTCTTATGGGTGGAAATGATgtgagaattgcttcatttattaacccgttttttatgtgcagtagaattccagcttctgtatcagttgtcaaatgctacagcacattaatattgcaggaccaacatatgactattcttactaaaattttttgtttcatttgcttccaataaaag
upper sequence: GRMZM2G100484_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 5'ss of exon 2
GCGAAGGG-ATCGCTTTGGGCTTCCAACACTACATACTGTCCTTGGGCACTGCTGTCATGATCCCCACGCTGCTGGTTCCTCTTATGGGTGGAAATGATgtgagcataccgtccttactcgtactcgtgtggtttcttgatcctgtttcgagttcctggctttcatcagcagtgttcgcatgaaa--caaacaaaatgctg
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-CGGAGGCTATAGCTCTGGGGTTCCAACACTACATCTTGGCCTTGGGGACTGCAGTGATGATTCCCTCATTCCTTGTTCCTCTGATGGGTGGAACTGATgtgagccaattctcaaaaccc--aatcatttttctttgtgatttggttctattaccattcaatctaccaaagccattttctttaaattccatgaagtttttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71430813|gb|DR811863.1|DR811863EST: CTGCTGTCATGATCCCCACGCTGCTGGTTCCTCTTATGGGTGGAAATGAT GATGACAAGGCCAAGGTGGTTCAAACGCTGCTGTTCGTTACTGGGATCAAG
genomic: CTGCTGTCATGATCCCCACGCTGCTGGTTCCTCTTATGGGTGGAAATGATgtgagcatac ... ttactgaaagGATGACAAGGCCAAGGTGGTTCAAACGCTGCTGTTCGTTACTGGGATCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGAAGGGATCGCTTTGGGCTTCCAACACTACATACTGTCCTTGGGCACTGCTGTCATGATCCCCACGCTGCTGGTTCCTCTTATGGGTGGAAATGATgtgagcataccgtccttactcgtactcgtgtggtttcttgatcctgtttcgagttcctggctttcatcagcagtgttcgcatgaaacaaacaaaatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA