1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataatatccctcatactcgtactggagttcttcacctcacttatattgtaactatgttctgattatcaaatctaatgtcttgtgtttgtacgttc...
species | Zea mays |
transcript | GRMZM2G099547_T04 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|78117103|gb|DV535490.1|DV535490
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|211360251|gb|FL253400.1|FL253400
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|32788063|gb|CD940299.1|CD940299
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: TAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|60394679|gb|DN227549.1|DN227549
genomic: TAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: GCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|211357595|gb|FL253396.1|FL253396
genomic: GCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAASSAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|78075508|gb|DV503942.1|DV503942
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|60348216|gb|DN215189.1|DN215189
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: AAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|86471527|gb|DY237897.1|DY237897
genomic: AAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: GGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|60337543|gb|DN204516.1|DN204516
genomic: GGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: GCAGGAAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|71433975|gb|DR815025.1|DR815025
genomic: GCAGG-AAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|148980593|gb|EE027217.2|EE027217
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|149104413|gb|EE289858.2|EE289858
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|50325142|gb|CO520268.1|CO520268
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|84351516|gb|DW245921.1|DW245921
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: TCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|16925502|gb|BM078570.1|BM078570
genomic: TCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: AAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|211360248|gb|FL253397.1|FL253397
genomic: AAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGEST: gi|78180203|gb|DV550576.1|DV550576
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagT-GGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTG
EST: AATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|6827273|gb|AW330916.1|AW330916
genomic: AATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: GAAAAGTAATGTTGAAACG TGG-GAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGAEST: gi|71450211|gb|DR831261.1|DR831261
genomic: GAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
EST: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACG TGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
genomic: CATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataat ... tttcatgcagTGGTGAAGGAAAGCTTGAAAAGCAGTTTCGCATGAGCTGTGTGGGATGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGCCCAAGCGAAAGACTGACAGAGCACATGTTTTAGACAAGGCTAAGCATCTTTCAAGGCTAAATGTTAAGGAGGCAGGAAAAGTAATGTTGAAACGgtataataatatccctcatactcgtactggagttcttcacctcacttatattgtaactatgttctgattatcaaatctaatgtcttgtgtttgtacgttc
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