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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccgctagcttttcgccctgtcgtacgtggtggattcgagtgtgtgggcctgctggacgtggacagaccgagatctgagaacgaacgtggcgtggcgtgcag

Basic information

species Zea mays
transcript GRMZM2G099363_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099363_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g06980.2 (Oryza sativa), 5'ss of exon 2
TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccgctagcttttcgccctgtcgtacgtggtggattcgagtgtgtgggcctgctggacgtggacagaccgagatctgagaacgaacgtggcgtggcgtgcag
||||||||||| ||||||||||||||||| ||||  ||| ||||||||||||| |||||| |||||||||| ||||||||||| | | ||    |  | | ||   || |  |    | ||  |||   |  | | |    ||  ||    ||  | ||   | || |||   ||   | ||      
TACATCCTGGAGACGAGCGTGTACCCGCGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGGTCACCGCCAACCACCCATGgtacgccacgaatcccctcctcctcctcttgggccccgaatcggagctcggcgacatc---gatttgattcgattggga---gggatcgatgttgttcttgcag----

upper sequence: GRMZM2G099363_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g06980.3 (Oryza sativa), 5'ss of exon 1
--------------------TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccgctagcttttcgccctgtcgtacgtggtggattcgagtgtgtgggcctgctggacgtggacagaccgagatctgagaacgaacgtggcgtggcgtgcag
                    ||||||||||| ||||||||||||||||| ||||  ||| ||||||||||||| |||||| |||||||||| ||||||||||| | | ||    |  | | ||   || |  |    | ||  |||   |  | | |    ||  ||    ||  | ||   | || |||   ||   | ||      
TCGGTGCTTCGTTTCCGCAGTACATCCTGGAGACGAGCGTGTACCCGCGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGGTCACCGCCAACCACCCATGgtacgccacgaatcccctcctcctcctcttgggccccgaatcggagctcggcgacatc---gatttgattcgattggga---gggatcgatgttgttcttgcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101272|gb|EE187384.2|EE187384
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|148972013|gb|EE022838.2|EE022838
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|78123950|gb|DV542334.1|DV542334
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|50336771|gb|CO531897.1|CO531897
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|91051409|gb|EB161827.1|EB161827
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|71443172|gb|DR824222.1|DR824222
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|67031902|gb|CO460651.1|CO460651
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|91876481|gb|EB406438.1|EB406438
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|120479778|gb|EH210632.1|EH210632
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456349|gb|FL164074.1|FL164074
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|91876447|gb|EB406404.1|EB406404
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCCAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456348|gb|FL164073.1|FL164073
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|71765961|gb|DR963898.1|DR963898
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|67019504|gb|CO448253.1|CO448253
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|148998166|gb|EE035959.2|EE035959
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|5510830|gb|AI857214.1|AI857214
EST:     CGGAGAGCATGAAGGAGCTGCGCGAGATNNNNNNNAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: CGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|74238429|gb|DT646343.1|DT646343
EST:     GAGCCCGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|148985087|gb|EE029621.2|EE029621
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|78082021|gb|DV510433.1|DV510433
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|78123859|gb|DV542243.1|DV542243
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|67017580|gb|CO446329.1|CO446329
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|76915702|gb|DV166083.1|DV166083
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|149015442|gb|EE045300.2|EE045300
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|148999943|gb|EE037004.2|EE037004
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|149014739|gb|EE044420.2|EE044420
EST:     CCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: CCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|149070197|gb|EE158600.2|EE158600
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|71761423|gb|DR959360.1|DR959360
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456350|gb|FL164075.1|FL164075
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCAACTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|71445182|gb|DR826232.1|DR826232
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|149077072|gb|EE165728.2|EE165728
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|86474833|gb|DY241203.1|DY241203
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|16916553|gb|BM072891.1|BM072891
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|74238430|gb|DT646344.1|DT646344
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|78091016|gb|DV519390.1|DV519390
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|93012213|gb|EB637733.1|EB637733
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456343|gb|FL164068.1|FL164068
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|93012147|gb|EB637667.1|EB637667
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|76012700|gb|DT939870.1|DT939870
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|91874063|gb|EB404020.1|EB404020
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|50337682|gb|CO532808.1|CO532808
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|71438266|gb|DR819316.1|DR819316
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|94479696|gb|EB708654.1|EB708654
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|78121952|gb|DV540336.1|DV540336
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|50334621|gb|CO529747.1|CO529747
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|148935114|gb|EC879154.2|EC879154
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|33466804|gb|CF243853.1|CF243853
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|91879069|gb|EB409026.1|EB409026
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGGCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGGTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|50337681|gb|CO532807.1|CO532807
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|89759581|gb|DY688363.1|DY688363
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|149050399|gb|EE155646.2|EE155646
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|37379818|gb|CF626673.1|CF626673
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|78089028|gb|DV517421.1|DV517421
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456344|gb|FL164069.1|FL164069
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456345|gb|FL164070.1|FL164070
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|149014740|gb|EE044421.2|EE044421
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|50338479|gb|CO533605.1|CO533605
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|50328057|gb|CO523183.1|CO523183
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|86474834|gb|DY241204.1|DY241204
EST:     GACCCGGAGAGCATGAAAGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211456347|gb|FL164072.1|FL164072
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCAACTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|19351241|gb|BM895773.1|BM895773
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|211091281|gb|FL220529.1|FL220529
EST:     ATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: ATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
EST: gi|71446731|gb|DR827781.1|DR827781
EST:     GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATG                         GAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT
genomic: GAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccg ... tggcgtgcagGAACCTGATGACCACCTCCGCCGACGAGGGCCAGTTCCTCAACATGCTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACATCCTGGACACGAGCGTGTACCCGCGGGAGCCGGAGAGCATGAAGGAGCTGCGCGAGATCACCGCCAAGCACCCATGgtatgtcccgctagcttttcgccctgtcgtacgtggtggattcgagtgtgtgggcctgctggacgtggacagaccgagatctgagaacgaacgtggcgtggcgtgcag

- - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA