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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacagtactgtgctcaagaggttgccaagagtatccagtagtagtgaatcttacaatgctttacttcgtccaaaaaatgtgataatttgttataa...

Basic information

species Zea mays
transcript GRMZM2G099317_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G099317_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g17710.1 (Oryza sativa), 5'ss of exon 2
GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacagtactgtgctcaa-gaggttgccaagagtatccagtagtagtgaatcttacaatgctttacttcgtccaaaaaatgtgataatttgttataa---
||||||||||||  |||||| |||| |||||||||||||| ||| || |  | || ||||||||||||||  |||||||||| ||||||| ||||||||||||||||||| ||  ||  ||   ||   ||  |        |    || || || || |  || |  | ||     ||   |  |  | ||||| | |||   
GCTATGATGATCATTATGGAAGCACACGCTTGTATGTTGGTAGACTGTCTTCGCGCACTCGTTCTCGTGACCTAGAATATCTTTTCGGCAGATATGGAAGgtaagaacagaacaatgggcattaagagagcttatttctctgaagtataatggatttttc--tggtaaaattatgataagtcactt--tcatttggtgtaagtg

upper sequence: GRMZM2G099317_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g02880.1 (Oryza sativa), 5'ss of exon 2
GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacagtactgtg---ctcaaga----ggttgccaagagtatccagtagtagt-gaatcttacaatgctttacttcgtccaaaaaatgtgataatttgttataa
||||||||||||| |||||| ||||||||||||||||||| ||| || |  |||| ||||||||||||||  ||||||| |  ||| ||| |||||||||||| | |||| ||  ||   || ||||      ||  |   ||     | |  | |  |||  |||      |||  |  ||   |||  ||| ||||  ||      
GCTATGATGATCGTTATGGAAGCACGCGCTTGTATGTTGGTAGACTGTCTTCCCGCACTCGTTCTCGTGACCTAGAATACCATTTCAGCAGATATGGAAGgtacggacagaaccatggtccttaagattttatttctctgaagcgcagattttttgcagaagtttatggattttttttctgtt--aaatttgtaataagctg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211251033|gb|FL007482.1|FL007482
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|87155664|gb|DY400453.1|DY400453
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|86472004|gb|DY238374.1|DY238374
EST:     CCCCGTACTCGTTCTCGTGATTTAAAATATCTCTTCGGCAAATATGGAAA                         AATACGAAAAGTGGAGTTGAAGCGCGACTATGCTTTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251028|gb|FL007477.1|FL007477
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|71310802|gb|DR791706.1|DR791706
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|50336824|gb|CO531950.1|CO531950
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251036|gb|FL007485.1|FL007485
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251030|gb|FL007479.1|FL007479
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|76280523|gb|DV020091.1|DV020091
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|148941832|gb|EC886805.2|EC886805
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|71438958|gb|DR820008.1|DR820008
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|22491590|gb|BU051513.1|BU051513
EST:     TACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: TACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|71298912|gb|DR785451.1|DR785451
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251034|gb|FL007483.1|FL007483
EST:     CCCCGTACTCGTTCTCGTGATTTANAATATCTCTTCKGCAAATATGGAAG                         AATACGAGAAGTGGANTTGAANCSCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|148934490|gb|EC878531.2|EC878531
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|71771421|gb|DR969358.1|DR969358
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251026|gb|FL007475.1|FL007475
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|19436214|gb|BM952624.1|BM952624
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211248808|gb|FL007473.1|FL007473
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|31406034|gb|CD484766.1|CD484766
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251029|gb|FL007478.1|FL007478
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251027|gb|FL007476.1|FL007476
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|26558569|gb|CA830804.1|CA830804
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211248809|gb|FL007474.1|FL007474
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|71438768|gb|DR819818.1|DR819818
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|29945034|gb|CB815435.1|CB815435
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|76282712|gb|DV022280.1|DV022280
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|74232122|gb|DT640036.1|DT640036
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|37425051|gb|CF650261.1|CF650261
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211248807|gb|FL007472.1|FL007472
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|19351122|gb|BM895654.1|BM895654
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|87153453|gb|DY398242.1|DY398242
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|149070621|gb|EE159032.2|EE159032
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|89251320|gb|DY623106.1|DY623106
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|76014888|gb|DT942058.1|DT942058
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|50333687|gb|CO528813.1|CO528813
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|76289551|gb|DV029119.1|DV029119
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|149108516|gb|EE292817.2|EE292817
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251031|gb|FL007480.1|FL007480
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|23357517|gb|BU645166.1|BU645166
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|148934137|gb|EC878155.2|EC878155
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|211251037|gb|FL007486.1|FL007486
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
EST: gi|148959184|gb|EE010639.2|EE010639
EST:     CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAG                         AATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT
genomic: CCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 944

GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 612

GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 515

GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 622

GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacag ... ctttccgcagAATACGAGAAGTGGAGTTGAAGCGCGACTATGCATTTATT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTATGATGATCGCTATGGAGGCACGCGCTTGTATGTTGGCAGATTGGCCCCCCGTACTCGTTCTCGTGATTTAGAATATCTCTTCGGCAAATATGGAAGgtaagaacagtactgtgctcaagaggttgccaagagtatccagtagtagtgaatcttacaatgctttacttcgtccaaaaaatgtgataatttgttataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG