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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTTCATCAGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggtaaaccttgtcaattctgtgattttgtttatgatggaaggattaacattttctctatttagcgtagtaaaaaaaactaatgcgcaaaattgc...

Basic information

species Zea mays
transcript GRMZM2G098815_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098815_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g09610.1 (Oryza sativa), 5'ss of exon 2
GATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTTCATCAGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggtaaaccttgt----caattctgtg-attttg----tttatga--tggaaggattaacattttctctatttagcgtagtaaaaaaaactaatgcgcaaaattgc
|| |||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||||||  || || | ||||| |||||| ||||  | || |||||||||||   ||||| || |    || || | || ||||||     | ||||  ||||||| ||  || || | |  |    |   ||||   | | |               
GAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTATTAAATgtaagcaataaacttttttcttcatttttttgtattttggatcatcatgaaatggaagggttcccaattcccccttcactctatgtaattcagaatgggt-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211052432|gb|FL214543.1|FL214543
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|50336738|gb|CO531864.1|CO531864
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|211052429|gb|FL214540.1|FL214540
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGT
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGT
EST: gi|71449728|gb|DR830778.1|DR830778
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|149082609|gb|EE171808.2|EE171808
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|89253146|gb|DY624932.1|DY624932
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|211052431|gb|FL214542.1|FL214542
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|211052434|gb|FL214545.1|FL214545
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|149005336|gb|EE039887.2|EE039887
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGGGATGAAACGTCACA-AAACTCAGAAC
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAA-TCAGAAC
EST: gi|211052435|gb|FL214546.1|FL214546
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTT
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTT
EST: gi|211052430|gb|FL214541.1|FL214541
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAAT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA
EST: gi|211052428|gb|FL214539.1|FL214539
EST:     AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAWT                         GCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTTCAACTA
genomic: AGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGTTAAATgtaagtggta ... tgatctacagGCAGCCTGTGATGAAACGTCAGAGAAATCAGAACGGGCGTTTGTCCAACTA