1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAGgtaagccggctgcctctgtatctgtctgtgctatgctctaggttgggattagttctgtcctgcaaattcgccccctttgctgtcttcaacgaggtcaaaa...
species | Zea mays |
transcript | GRMZM2G098174_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAG CCGACTCTGAGCATTGGAGTTGTGCTTGTTCAAAAGTGTGAATTGCATGGAEST: gi|93012172|gb|EB637692.1|EB637692
genomic: TATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAGgtaagccggc ... ttaattccagCCGACTCTGAGCATTGGAGTTGTGCTTGTTCAAAAGTGTGAATTGCATGGA
EST: TATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAG CCGACTCTGAGCATTGGAGTTGTGCTTGTTCAAAAGTGTGAATTGCATGGAEST: gi|211180431|gb|FL072957.1|FL072957
genomic: TATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAGgtaagccggc ... ttaattccagCCGACTCTGAGCATTGGAGTTGTGCTTGTTCAAAAGTGTGAATTGCATGGA
EST: TATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAG CCGACTCTGAGCATTGGAGTTGTGCTTGTTCAAAAAGTGTGAATTGCATGG
genomic: TATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAGgtaagccggc ... ttaattccagCCGACTCTGAGCATTGGAGTTGTGCTTGTTCAAAA-GTGTGAATTGCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAGgtaagccggctgcctctgtatctgtctgtgctatgctctaggttgggattagttctgtcctgcaaattcgccccctttgctgtcttcaacgaggtcaaaa
- - - - - - - - - GCAAAG
- - - - - - - - - - - AAGCAA
- - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccccc