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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTCGCGCTAGGTCCCATCCAGTTCGGTTTCACATGTGGCTACTCCTCACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccctgttcttttatcattcgttctttctttctttttaatgcttacccttgcttgcttgctctttcttggcggatgcatgcag

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097768_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g50280.1 (Oryza sativa), 5'ss of exon 1
CATTGTCGCGCTAGGTCCCATCCAGTTCGGTTTCACATGTGGCTACTCCTCACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaa--------cccctgttcttttatcattcgttctttctttctttttaat--------gcttacccttgcttgct-tgctctttcttggcggatgcatgcag
||| ||||| || || |||||||||||||| ||||| || |||| |||||| ||||| ||||||||||||||  | ||||| |||||| ||||||| |||||||          | || |||| ||    |    |  || |  ||  |||||          || |  ||  ||||| ||    ||||  ||    || |||||
CATCGTCGCCCTCGGCCCCATCCAGTTCGGCTTCACCTGCGGCTTCTCCTCGCCCACCCAGGACGCCATCATCTCCGACCTCGGCCTCACCCTCTCCGAGgtgaggcaagctctctctcttctcttggagtatcatgcttatgcctaattaatcttatcggatttgcgtttaattgctctgtctcttctctgctcgcgc-tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6601696|gb|AW256092.1|AW256092
EST:     NGCCCACGCAGGACGCCATCATTGCTGATCTCGGCCTCTCCCTCTCTGAG                         NTCTCCCTTTTCGGNTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|211276578|gb|FL135686.1|FL135686
EST:     CGCCCACGCAGGACGCCATCATTGCTGATCTCGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|101389587|gb|EB816726.1|EB816726
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAAGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|50325333|gb|CO520459.1|CO520459
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|148987704|gb|EE031592.2|EE031592
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|71766862|gb|DR964799.1|DR964799
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|211019851|gb|FL284293.1|FL284293
EST:     CGCCCACGCAGGACGCCATCATTGCTGATCTCGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGAT
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGAT
EST: gi|50325566|gb|CO520692.1|CO520692
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|148964510|gb|EC905855.2|EC905855
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|71331313|gb|DR802490.1|DR802490
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|211126451|gb|FL284306.1|FL284306
EST:     CGCCCACGCAGGACGCCATCATTGCTGATCTCGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|148991896|gb|EE033498.2|EE033498
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|211126444|gb|FL284299.1|FL284299
EST:     CGCCCACGCAGGACGCCATCATTGCTGATCTCGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
EST: gi|148958173|gb|EC904377.2|EC904377
EST:     CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAG                         TTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC
genomic: CACCCACGCAGGACGCCATCATTGCTGACCTTGGCCTCTCCCTCTCTGAGgtgaacccct ... atgcatgcagTTCTCCCTCTTCGGTTCATTATCTAATGTAGGGGCGATGGTAGGCGCCATC