1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGCTATACAAAGCTTGATTCTGTCAATGCTGAGGATTTCTTCTGCCGCTTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTgtaagaacacagcaagacttgcaatttcattattttggatttgcattcatgttgcatttacaatttgtagcaagttcatctagtctgattctttaacttgtgcaatgtgttaatctcctgctacctctaatccag
species | Zea mays |
transcript | GRMZM2G097726_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAGATCG-ATAGCAG- CATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCGEST: gi|19822612|gb|BQ048636.1|BQ048636
genomic: CCAGATCGTATAGCAGTgtaagaacac ... tctaatccagCATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCG
EST: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGT CATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCGEST: gi|18648816|gb|BM497635.1|BM497635
genomic: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTgtaagaacac ... tctaatccagCATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCG
EST: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGT CATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCGEST: gi|18649546|gb|BM498365.1|BM498365
genomic: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTgtaagaacac ... tctaatccagCATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCG
EST: TCGAGTATAAATCAGCTACTGGCAGGTTTGGAACCAGATCGTATAGCAGT CATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCGEST: gi|18649399|gb|BM498218.1|BM498218
genomic: TCGAGTATAAATCAGCTACTGGCAGCTTT-GTACCAGATCGTATAGCAGTgtaagaacac ... tctaatccagCATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCG
EST: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGT CATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCGEST: gi|18649290|gb|BM498109.1|BM498109
genomic: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTgtaagaacac ... tctaatccagCATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCG
EST: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGC CATATATTAGATAGCTTTGGTTTTCGGAAGCTGCTTTTCCCCCTACATGCG
genomic: TTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTgtaagaacac ... tctaatccagCATATATTAGATAGCTTTGGTTTTCGGAAGCAGCATTTCCCCCTACATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCTATACAAAGCTTGATTCTGTCAATGCTGAGGATTTCTTCTGCCGCTTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTgtaagaacacagcaagacttgcaatttcattattttggatttgcattcatgttgcatttacaatttgtagcaagttcatctagtctgattctttaacttgtgcaatgtgttaatctcctgctacctctaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT