1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttcttcctccccctgaggttatttcttctgtctcgtttgaattttaaatatggatttggaagtagcattaaccttgtaatggtaaaacagttca...
species | Zea mays |
transcript | GRMZM2G096585_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTNGACAAG GTCAAGTGATAAAGGGTTCGGATCAAGEST: gi|33091370|gb|CF051364.1|CF051364
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211437291|gb|FL195677.1|FL195677
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|148938868|gb|EC883219.2|EC883219
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211434699|gb|FL195668.1|FL195668
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|6626419|gb|AW257951.1|AW257951
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|149088396|gb|EE177498.2|EE177498
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211439890|gb|FL195693.1|FL195693
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAEST: gi|31910479|gb|CD651444.1|CD651444
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211437303|gb|FL195689.1|FL195689
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211432089|gb|FL195646.1|FL195646
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGATAACCCTTCAAGTTCAAGCTTSGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211437295|gb|FL195681.1|FL195681
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211429500|gb|FL195643.1|FL195643
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTSGACAAG GTCAAGTGATAAAGGEST: gi|211437302|gb|FL195688.1|FL195688
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAEST: gi|211432101|gb|FL195658.1|FL195658
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGG-TTGGGATCAAGGAATCAAGACCATGAAGAAAGGA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211437300|gb|FL195686.1|FL195686
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATEST: gi|148961764|gb|EE012538.2|EE012538
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAAT
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211434692|gb|FL195661.1|FL195661
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211429499|gb|FL195642.1|FL195642
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211432094|gb|FL195651.1|FL195651
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGEST: gi|9952051|gb|BE638634.1|BE638634
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|148986243|gb|EE029994.2|EE029994
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211434706|gb|FL195675.1|FL195675
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAEST: gi|211432102|gb|FL195659.1|FL195659
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|149111770|gb|EE190920.2|EE190920
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|149071261|gb|EE159656.2|EE159656
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211434704|gb|FL195673.1|FL195673
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGGTGGGATCAAGGAATCAAGACCAEST: gi|211434698|gb|FL195667.1|FL195667
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAACAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAEST: gi|211429501|gb|FL195644.1|FL195644
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAA-AGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAANGGTTGGGATCAAGGAATCAAGACCATGAAGAAAEST: gi|71767511|gb|DR965448.1|DR965448
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211429497|gb|FL195640.1|FL195640
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: GACTCAAGCCGTGATNCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGEST: gi|211432098|gb|FL195655.1|FL195655
genomic: GACTCAAGCCGTGAT-CGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211432099|gb|FL195656.1|FL195656
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211434700|gb|FL195669.1|FL195669
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGEST: gi|211437294|gb|FL195680.1|FL195680
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211437298|gb|FL195684.1|FL195684
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTNGGATCAAGGAATCAAGACCATGAAGAAAEST: gi|149081119|gb|EE170223.2|EE170223
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAA
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|211434697|gb|FL195666.1|FL195666
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCMAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|5296103|gb|AI782978.1|AI782978
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|148958573|gb|EC904817.2|EC904817
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGEST: gi|149009170|gb|EE041295.2|EE041295
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
EST: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG GTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
genomic: CGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttct ... caatgcccagGTCAAGTGATAAAGGGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGgtaaatttcttcctccccctgaggttatttcttctgtctcgtttgaattttaaatatggatttggaagtagcattaaccttgtaatggtaaaacagttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT