Sequence
atgc intronic sequence ATGC exonic sequenceATCCGTGCACAAAGTACACACTTCTTGAGAGGTTTTCAACAGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtacttcaacagttcagcatacctcaccactacatggccctttatctctagtgatattgtatggaatgtataattttgggggaagaaataatgccactat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095887_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g06690.3 (Oryza sativa), 5'ss of exon 22
ATCCGTGCACAAAGTACACACTTCTTGAGAGGTTTTCAACAGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtactt----caacagt-tcagcatacctcaccactacatggccctttatctctagtgatattgtatggaatgtataattttgggggaagaaataatgccactat
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ATCCGCGCCCAAAGCACACATTTTTTGAGAGGCTTTCAACAACTAATACCGAATGAATGGATTAACATGTTCAATGAACATGAATTCCAGgtactttcccttgcattatgattacagatagaaaaaaaatgctgtttttactcca-tatttttgcaaaata-atatagtcctacagtg-gtcacaatgtctct--
upper sequence: GRMZM2G095887_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G04180.1 (Glycine max), 5'ss of exon 21
ATCCGTGCACAAAGTACACACTTCTTGAGAGGTTTTCAACAGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtacttcaacagttcagcatacctcaccactacatggccctttatctc-tagtgatattgtatggaatgtataattttgggggaagaaataatgccactat----
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ATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATGCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGgtttttt-----tctgataatcttatccacttttcggtcttgaaagtgatgctattctcattttgtattgttggttttgatatttgctcgtgtggtggtcttaag
upper sequence: GRMZM2G095887_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 21
ATCCGTGCACAAAGTACACACTTCTTGAGAGGTTTTCAACAGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtactt---caacagttcagcatacctcaccactacatggccctttatctctagtgatattgtatggaatgtataattttgggggaagaaataatgccactat
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ATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGgtttttttccaataatcttatccgcttttcagtctcgaaacctatgttctctttt--ttttcaattgtattgttggttttgatatttgctcgtgtggtggtc-
upper sequence: GRMZM2G095887_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 22
ATCCGTGCACAAAGTACACACTTCTTGAGAGGTTTTCAACAGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtact----tcaacagttcagcatacctcaccactaca---tggccctttatctctagtgatattgtatggaatgtataattttgggggaagaaataatgccactat
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ATACGTCAGCAAAGTACTCATTTCTTGAGGGGTTTTCAGCAACTTATACAAAGAGATTGGATTGAAATGTTTGATGAGCATGAACTTCAGgtactgtgttcagctatgctagataatgaaacaacataagttggacctatattggatggcacaatcactggtattattaaacttggttatataggaagag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18384464|gb|BM417663.1|BM417663EST: AGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAG GTTCTTATATCTGGATCTTTAGAAAGCTTGGATATTGATGACCTGCGGTCG
genomic: AGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtacttcaac ... tttcctgcaaGTTCTCATATCTGGATCTTTAGAAAGCTTGGATATTGATGACCTGCGGTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCCGTGCACAAAGTACACACTTCTTGAGAGGTTTTCAACAGCTTATACCAAAAGATTGGATTGATATGTTCAATGAACATGAAATTCAGgtacttcaacagttcagcatacctcaccactacatggccctttatctctagtgatattgtatggaatgtataattttgggggaagaaataatgccactat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaata