1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGCAACTTTTGGACGCCTGTGGACAGAGGTGGAGGAGCGGCATGCCTGCAACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttcgtcacatgctgttttctgagctgacagaacttacttttgccatttgttttttaacttttttattttttgctttgttaatattttttttattcgtggacaag
species | Zea mays |
transcript | GRMZM2G095778_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT ATCACCAAAGATGCTGGCTGCGTNCA-TGGCACTAAGAAAAGATCEST: gi|71426823|gb|DR807873.1|DR807873
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGT-CAATGGCACTAAGAAAAGATC
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT ATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAAEST: gi|78022079|gb|DV490466.1|DV490466
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAA
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT ATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGAGGAAAEST: gi|78116957|gb|DV535344.1|DV535344
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAA
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT ATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAAEST: gi|5922304|gb|AW055593.1|AW055593
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAA
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT ATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGAGGAAAEST: gi|149106846|gb|EE188744.2|EE188744
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAA
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT AT-------G---CTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAAEST: gi|12968816|gb|BG265852.1|BG265852
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAA
EST: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACAT ATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGAGGAAA
genomic: AACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttc ... cgtggacaagATCACCAAAGATGCTGGCTGCGTCAATGGCACTAAGAAAAGATCGTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCAACTTTTGGACGCCTGTGGACAGAGGTGGAGGAGCGGCATGCCTGCAACATCCTTATGCTGGCTGCTGCTACTGTAATTCCACCATTTGAAAACATgtatgagttcgtcacatgctgttttctgagctgacagaacttacttttgccatttgttttttaacttttttattttttgctttgttaatattttttttattcgtggacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT