1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCAGCATGCCTAAGATAAAGACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacatacgctattaatttgaggcactcgccactgatgtcagttgttatttatttcctagcacaggatcgtactaacgctatgccctcatgcag
species | Zea mays |
transcript | GRMZM2G095670_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|60359481|gb|DN226454.1|DN226454
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|211218105|gb|FL085264.1|FL085264
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|71306037|gb|DR789154.1|DR789154
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|78545123|gb|DV622621.1|DV622621
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|211218101|gb|FL085260.1|FL085260
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|211218104|gb|FL085263.1|FL085263
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|211218102|gb|FL085261.1|FL085261
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|78544043|gb|DV621541.1|DV621541
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|60394589|gb|DN227459.1|DN227459
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|19822372|gb|BQ048396.1|BQ048396
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|211215545|gb|FL085259.1|FL085259
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTAEST: gi|211215544|gb|FL085258.1|FL085258
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
EST: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAG CTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
genomic: GGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacat ... cctcatgcagCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGCATGCCTAAGATAAAGACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGgtaggcacatacgctattaatttgaggcactcgccactgatgtcagttgttatttatttcctagcacaggatcgtactaacgctatgccctcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT