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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTCGGTGAAGCTGTTGGATCCAGgtactgtattctgttagagtatatttggtagtttagatattgtgtatcgtagactgtcatatatctatgggttgctttgtctcccaagtcctgtactcta...

Basic information

species Zea mays
transcript GRMZM2G095323_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878948|gb|EB408905.1|EB408905
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|211366787|gb|FL192156.1|FL192156
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|78125182|gb|DV543566.1|DV543566
EST:     AAATTCGGAGAAGCTGTTGGATCCAA                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAGGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|148956175|gb|EC901959.2|EC901959
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|71770155|gb|DR968092.1|DR968092
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|76293362|gb|DV032930.1|DV032930
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|71439253|gb|DR820303.1|DR820303
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|71310796|gb|DR791700.1|DR791700
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|148986012|gb|EE029858.2|EE029858
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|89756630|gb|DY686595.1|DY686595
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCCAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|88755486|gb|DY539627.1|DY539627
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|71773093|gb|DR971011.1|DR971011
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|74233328|gb|DT641242.1|DT641242
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|78116974|gb|DV535361.1|DV535361
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|78115630|gb|DV534018.1|DV534018
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
EST: gi|71428073|gb|DR809123.1|DR809123
EST:     GAATTCGGTGAAGCTGTTGGATCCAG                         AATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG
genomic: GAATTCGGTGAAGCTGTTGGATCCAGgtactgtatt ... ttgattccagAATTCTTCAAACAAATCCAGACGCACATGAGGTGCATTGCTCAAGGGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATTCGGTGAAGCTGTTGGATCCAGgtactgtattctgttagagtatatttggtagtttagatattgtgtatcgtagactgtcatatatctatgggttgctttgtctcccaagtcctgtactcta

- - - - TGAAGC
- - - - - AAGCTG
- - - - - - GCTGTT