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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGAGACCTGCCTAAGTTGAGTATTAACAGACTCGGGCGGTTCGTGTCGCTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtagccatatacgtatggtatggatactatatcactatgagcagttgacgtgcacaactcatcaaggcccccagatggggtgagaccgccagcagcagtgtcgttcgttcgtccgtgcgttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcag

Basic information

species Zea mays
transcript GRMZM2G095141_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095141_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g04020.1 (Oryza sativa), 5'ss of exon 2
---------TCGGAGACCTGCCTAAGTTGAGTATTAACAGACTCGGGCGGTTCGTGTCGCTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtg-tagccatatacgtatggtatggatactatatcactatgagcagttgac--gtgcacaactcatcaaggcccccagatggggtgagaccgccagcagcagtgtcgttcgttcgtccgtgcgttctgccgaatgcttttggttgtttgaagttcgtaattgtttgctcggctttcag
         | || |||||||| |||||||||||||||||||| |   |||||   || |   | ||  | ||  ||         |  || |||  || |||   |||||||||  |||   | |||   ||  |    |||  |   ||  |      ||  |  ||       |  ||         |  | |     ||  |                                                                                      
CACTTGGTCTTGGGGACCTGCCAAAGTTGAGTATTAACAGACTTGAAAGGTTC---TCTCCAAGTGCCTGCAGAGCA------AGTGTTGATGACAGCAACACCAACAAgtaagttctagtgttctactgttgcaaactttaccgtgctacatttcttcctttcctagttgttgctttgtcggtatttttactttgacgcggaatgttt-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211335900|gb|FL358434.1|FL358434
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211386581|gb|FL357085.1|FL357085
EST:     CTGGGCGCTCGGAGGCCACCGGCAG-CGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCCTCAGATGGCATTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|71301051|gb|DR786555.1|DR786555
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211512679|gb|FL346133.1|FL346133
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCCTCAGATGGCATTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|78075611|gb|DV504045.1|DV504045
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|149081591|gb|EE170732.2|EE170732
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|148941574|gb|EC886510.2|EC886510
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|149100624|gb|EE186712.2|EE186712
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|78078033|gb|DV506448.1|DV506448
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|71447021|gb|DR828071.1|DR828071
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211347508|gb|FL349165.1|FL349165
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCC
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCC
EST: gi|148951347|gb|EC897061.2|EC897061
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|211310888|gb|FL144806.1|FL144806
EST:     CTGGGCGCTCGGAGGCCACCGGCAG-CGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACA
EST: gi|148959199|gb|EE010648.2|EE010648
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|91872713|gb|EB402670.1|EB402670
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|148951196|gb|EC896884.2|EC896884
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
EST: gi|149076596|gb|EE165231.2|EE165231
EST:     CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAA                         ATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA
genomic: CTGGGCGCTCGGAGGCCACCGGCCGACGACGACGACCACAGCACTGGCAAgtaagtgtag ... cggctttcagATACAGCAGCAGCTCCTGCAACAATGGCAGCCATCAGATGGCCTTCCATCA