Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatcccggtgtctggcttctttcgtcgtcgtttttggcgtgtgattattcgttcagtctattgtttatcctgagtcctgaccgttaaaactttttgtgttctcag

Basic information

species Zea mays
transcript GRMZM2G095114_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 2
CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatcccggtgtctggcttctttcgtcgtcgtttttggcgtgtgattattcgttcagtctattgtttatcctgagtcctgaccgttaaaactttttgtgttctcag
||||| ||||||||||||||||||||||||||||| || |||||||||    |  |    ||  |||    ||  ||   |||    || || || | |  |  |  || |   |  | ||    | | ||       ||| |  | | ||
CTTCCGCTCTCGCTCCTCAAGACCGCCCAGGGGCATCCCATGgtaaga----gaagatccgccgcttcg--cgctgtgcgtgg----tggttgtttggtttggtttctgatcggctagggtttgaaacttttgtgtggttttt--ttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324422|gb|CO519548.1|CO519548
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211192048|gb|FL055486.1|FL055486
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194451|gb|FL055502.1|FL055502
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194439|gb|FL055490.1|FL055490
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196844|gb|FL055505.1|FL055505
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|4612896|gb|AI603735.1|AI603735
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194442|gb|FL055493.1|FL055493
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196843|gb|FL055504.1|FL055504
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196851|gb|FL055512.1|FL055512
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|60356830|gb|DN223803.1|DN223803
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196849|gb|FL055510.1|FL055510
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196854|gb|FL055515.1|FL055515
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|32804087|gb|CD956323.1|CD956323
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACATACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|13558271|gb|BG549627.1|BG549627
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCTCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGC-CCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|4610157|gb|AI600996.1|AI600996
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAG
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAG
EST: gi|211194447|gb|FL055498.1|FL055498
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|32788395|gb|CD940631.1|CD940631
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|32801928|gb|CD954164.1|CD954164
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211288302|gb|FL055521.1|FL055521
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|60356922|gb|DN223895.1|DN223895
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|5566778|gb|AI881644.1|AI881644
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194450|gb|FL055501.1|FL055501
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|78023597|gb|DV491984.1|DV491984
EST:     CCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194438|gb|FL055489.1|FL055489
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACC-AATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194445|gb|FL055496.1|FL055496
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211288305|gb|FL055524.1|FL055524
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATSGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194444|gb|FL055495.1|FL055495
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211192050|gb|FL055488.1|FL055488
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|13558630|gb|BG549986.1|BG549986
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCATGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|9254192|gb|BE344660.1|BE344660
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|32795180|gb|CD947416.1|CD947416
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196853|gb|FL055514.1|FL055514
EST:     CTTCCCCTCTCGCTCCTCWAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAWTGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|76012388|gb|DT939558.1|DT939558
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211288303|gb|FL055522.1|FL055522
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|19350796|gb|BM895328.1|BM895328
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|60337877|gb|DN204850.1|DN204850
EST:     CCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|18180735|gb|BM381945.1|BM381945
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194452|gb|FL055503.1|FL055503
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194446|gb|FL055497.1|FL055497
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196847|gb|FL055508.1|FL055508
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211192049|gb|FL055487.1|FL055487
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194440|gb|FL055491.1|FL055491
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196857|gb|FL055518.1|FL055518
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194441|gb|FL055492.1|FL055492
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|84980176|gb|DW530525.1|DW530525
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196856|gb|FL055517.1|FL055517
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196848|gb|FL055509.1|FL055509
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|17929737|gb|BM266649.1|BM266649
EST:     GGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: GGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211288300|gb|FL055519.1|FL055519
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196855|gb|FL055516.1|FL055516
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|32804206|gb|CD956442.1|CD956442
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196852|gb|FL055513.1|FL055513
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCA-CCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211196845|gb|FL055506.1|FL055506
EST:     CTTMAMCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTT-CCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211288306|gb|FL055525.1|FL055525
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211192047|gb|FL055485.1|FL055485
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|211194443|gb|FL055494.1|FL055494
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|71313635|gb|DR793393.1|DR793393
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
EST: gi|32801729|gb|CD953965.1|CD953965
EST:     CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATG                         CTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC
genomic: CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 48 (downstream exon)
Score: 293

CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 173

CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 101

CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 154

CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatccc ... gtgttctcagCTCGTGGAGCTGAAGAATGGTGAGACGTACAACGGGCATCTGGTCAATTGCGACACGTGGATGAACATCCACCTTAGGGAGGTTATTTGCACCTCAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCCCCTCTCGCTCCTCAAGACCGCCCAGGGGCACCCAATGgtaagatcccggtgtctggcttctttcgtcgtcgtttttggcgtgtgattattcgttcagtctattgtttatcctgagtcctgaccgttaaaactttttgtgttctcag

- - - - - - CTCCTC