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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACCGTTGCCTACAACAAGGATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgagtttggggatttgctatgaaccttctaattccccttctgtttttttattagttggattggagatggatttgacgctcctgttcctattctgatctctgcag

Basic information

species Zea mays
transcript GRMZM2G094712_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55540.2 (Oryza sativa), 5'ss of exon 2
GTGACCGTTGCCTACAACAAGGATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgagtttggggatttgctatgaaccttctaattccccttctgtttttttattagttggattggagatggatttgacgctcctgttcctattctgatctctgcag---------
||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||  || ||||| || ||||  |  || |     | | |  || ||||      ||||||||| | ||||||||||  ||   ||  |  |||||||   | ||         
GTGACGGTCGCGTACAACAAGGATCCCAGCCCCGTGAAGGTCAATCTCGGCGTCGGCGCCTACCGGACCGAGgtaaggtgttttgggggaatttctattgattttttg----ctccttcgtattttgg---attggattggtggtggatttgac-ttcgattttgtggtctgatcggagtaggaagggaag

upper sequence: GRMZM2G094712_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 2
GTGACCGTTGCCTACAACAAGGATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgagtttggggatttgctatgaaccttctaattccccttctgtttttttattagttggattggagatggatttgacgctcctgttcctattctgatctctgcag
||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||  || ||||| || ||||  |  || |     | | |  || ||||      ||||||||| | ||||||||||  ||   ||  |  |||||||   | ||
GTGACGGTCGCGTACAACAAGGATCCCAGCCCCGTGAAGGTCAATCTCGGCGTCGGCGCCTACCGGACCGAGgtaaggtgttttgggggaatttctattgattttttg----ctccttcgtattttgg---attggattggtggtggatttgac-ttcgattttgtggtctgatcggagtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211266228|gb|FL159045.1|FL159045
EST:     ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAAT
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAAT
EST: gi|16137337|gb|BI894202.1|BI894202
EST:     ATCCCAGCCCCATGAAGGTCAACCTCGGGGTTGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGA
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGA
EST: gi|109637540|gb|EC591085.1|EC591085
EST:     ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAG                         GAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG
genomic: ATCCCAGCCCCGTGAAGGTCAACCTCGGGGTCGGCGCCTACCGGACCGAGgtaagatgag ... atctctgcagGAAGGGAAGCCCCTAGTGCTGAACGTGGTCAGGCGCGCCGAGCAAATGTTG