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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttactagcgacgagatccaagctcgcgcgcagtattccttaggatgtttagtatttatcctttcagctgttgatgtgtcgcatagtcataccgat...

Basic information

species Zea mays
transcript GRMZM2G094497_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 2
-------------GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACA---TGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttactagcgacgagatccaa--------gctcgcgcgcagt-attccttaggatgtttagtatttatcctttcagctgttgatgtgtcgcatagtcataccgat
             |   |  | |||||| ||||||||||| |||  || |    |||||||||| ||||| ||||||||||||||||||| || ||  |   ||||||         |||   |||   | | |     |   |||| || |||  | |    |||  ||  |    || || |  | ||   
GTTGCTCTTGCTGGGCATCAAACATGGGTCTGGTGAAGGATGGCGCCGCCGATTTGGAGGAGGGGACCCTGGAGATCGGCATGGgtgagtaacgag--atcggatccattgcgttgtgcttttgcgtgatcagtggcctgtgagttttgtgttttgcttccgggcttctggcg----gcgtactggtgcc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211474167|gb|FL062075.1|FL062075
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211469120|gb|FL062058.1|FL062058
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476692|gb|FL062093.1|FL062093
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAA-CCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476700|gb|FL062101.1|FL062101
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211466590|gb|FL062041.1|FL062041
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459011|gb|FL062002.1|FL062002
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211355901|gb|FL061989.1|FL061989
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042632|gb|FL062114.1|FL062114
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|58029618|gb|CX725045.1|CX725045
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|31358862|gb|CD443219.1|CD443219
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211474177|gb|FL062085.1|FL062085
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042620|gb|FL062102.1|FL062102
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|13150538|gb|BG320860.1|BG320860
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211466588|gb|FL062039.1|FL062039
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211045585|gb|FL062117.1|FL062117
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211045586|gb|FL062118.1|FL062118
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476689|gb|FL062090.1|FL062090
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459001|gb|FL061992.1|FL061992
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211474168|gb|FL062076.1|FL062076
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|19058187|gb|BM736854.1|BM736854
EST:     GGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211469113|gb|FL062051.1|FL062051
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476694|gb|FL062095.1|FL062095
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGG
EST: gi|211464051|gb|FL062022.1|FL062022
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|31355490|gb|CD439847.1|CD439847
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211466591|gb|FL062042.1|FL062042
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211466583|gb|FL062034.1|FL062034
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211464054|gb|FL062025.1|FL062025
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211471644|gb|FL062069.1|FL062069
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476695|gb|FL062096.1|FL062096
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211464058|gb|FL062029.1|FL062029
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459012|gb|FL062003.1|FL062003
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042625|gb|FL062107.1|FL062107
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211464059|gb|FL062030.1|FL062030
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|19058466|gb|BM737133.1|BM737133
EST:     GGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211471635|gb|FL062060.1|FL062060
EST:     GGTGTAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042624|gb|FL062106.1|FL062106
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|31349484|gb|CD433841.1|CD433841
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211355897|gb|FL061985.1|FL061985
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAA-CCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|14191177|gb|BG833407.1|BG833407
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|31351385|gb|CD435742.1|CD435742
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042627|gb|FL062109.1|FL062109
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211461526|gb|FL062008.1|FL062008
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211471646|gb|FL062071.1|FL062071
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211471643|gb|FL062068.1|FL062068
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAA-CCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211466592|gb|FL062043.1|FL062043
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042631|gb|FL062113.1|FL062113
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211355900|gb|FL061988.1|FL061988
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042628|gb|FL062110.1|FL062110
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211474179|gb|FL062087.1|FL062087
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211471645|gb|FL062070.1|FL062070
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476697|gb|FL062098.1|FL062098
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476690|gb|FL062091.1|FL062091
EST:     GGTGAAGGAAGGCRTCGACRTGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|30160605|gb|CB924334.1|CB924334
EST:     GGTGTAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211461527|gb|FL062009.1|FL062009
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211464060|gb|FL062031.1|FL062031
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACC-TTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459000|gb|FL061991.1|FL061991
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476699|gb|FL062100.1|FL062100
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|31628315|gb|CD526548.1|CD526548
EST:     GGTGTAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211469119|gb|FL062057.1|FL062057
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|14191176|gb|BG833406.1|BG833406
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGCTGTTGCTGGGCCTCTGGTCATATTGGATAAA
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGG-TGTTGCTGGGCCTCTGGTCATATTGGATAAA
EST: gi|211469117|gb|FL062055.1|FL062055
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459009|gb|FL062000.1|FL062000
EST:     GGAGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211469112|gb|FL062050.1|FL062050
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459007|gb|FL061998.1|FL061998
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211474171|gb|FL062079.1|FL062079
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211469111|gb|FL062049.1|FL062049
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211042623|gb|FL062105.1|FL062105
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211471641|gb|FL062066.1|FL062066
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211464050|gb|FL062021.1|FL062021
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459003|gb|FL061994.1|FL061994
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211464057|gb|FL062028.1|FL062028
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|31358847|gb|CD443204.1|CD443204
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211469108|gb|FL062046.1|FL062046
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211459010|gb|FL062001.1|FL062001
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211466585|gb|FL062036.1|FL062036
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211476687|gb|FL062088.1|FL062088
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
EST: gi|211458999|gb|FL061990.1|FL061990
EST:     GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG
genomic: GGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 723

GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1371

GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 515

GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1325

GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttact ... acctgtgcagAGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTTCAGCATGGGCCTGGTGAAGGAAGGCATCGACATGGAGGAGGGAACCCTTGAGATCGGCATGGgtgagttactagcgacgagatccaagctcgcgcgcagtattccttaggatgtttagtatttatcctttcagctgttgatgtgtcgcatagtcataccgat

- - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC