1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGATAACCTCAACTATACTGCAAATGGGAAGCATACTCAGTATACTTTCTACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatctcatcggaattttggttagacgtttgtttgtttttccctcatatggaatctcacttggttacctgtcttttttcag
species | Zea mays |
transcript | GRMZM2G093101_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|76288888|gb|DV028456.1|DV028456
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|71438566|gb|DR819616.1|DR819616
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|211529301|gb|FL356735.1|FL356735
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: CAACTACACCTCAGGATACATTCATCATTGCACAATNNNNNNNGT-GGAG TTTGACACAAAGTATTACTATGEST: gi|71439022|gb|DR820072.1|DR820072
genomic: CAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAA-GTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|71446702|gb|DR827752.1|DR827752
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|149085557|gb|EE175068.2|EE175068
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|148938422|gb|EC882740.2|EC882740
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|149094916|gb|EE180497.2|EE180497
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|149086647|gb|EE176188.2|EE176188
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAGEST: gi|71312492|gb|DR792778.1|DR792778
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
EST: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAG TTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
genomic: ACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatct ... cttttttcagTTTGACACAAAGTATTACTATGCTGTTGGGATTGGACAAACGGTGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATAACCTCAACTATACTGCAAATGGGAAGCATACTCAGTATACTTTCTACAACTACACCTCAGGATACATTCATCATTGCACAATAAAAAAGTTGGAGgtcaccatctcatcggaattttggttagacgtttgtttgtttttccctcatatggaatctcacttggttacctgtcttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG