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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCGCTTCCCCGCAGCCACGCGGCGGTGGCGGCAGACGGCGTGGTGGCGGCCGCGGCCAAGACGGGAGCGACCGCATCGACGCCCTTGGCCGCCTGCTgtaacgcttgacccatctccgtcactgttgtgtgcgccgcgtcgcccactgatggtctctgctctcggttgcag

Basic information

species Zea mays
transcript GRMZM2G092568_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092568_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g04300.1 (Oryza sativa), 5'ss of exon 1
CCTTCGCTTCCCCGCAGCCACGCGGCGGTGGCGGCAGACGGCGTGGTGGCGG------CCGCGGCCAAGACGGGAGCGACCGCATCGACGCCCTTGGCCGCCTGCTgtaacgcttgac-ccatctccgtcactgttgtgtgcgccgcgtcgcccactgatggtct--ctgctc-tcggttgcag---------------------
     || || | || ||   |||||||  | ||  | || || || |||||      |||||||   || ||||||||||||||||||||||| |||||||| ||||||      |  ||| | |   ||   |   | |   | | |   || | | || | |   ||||    | |||  |                     
----AGCCTCGCGGCGGCG--GCGGCGGCCGAGGGGGGCGACGCGGCGGCGGAAGAGGCCGCGGCGGCGATGGGAGCGACCGCATCGACGCCCTCGGCCGCCTCCTgtaagatacaaggccaacgcgcccatgctcccgcgattctccttttccgcagttgctttgcttgcttgctgattgttggattccttcctccctccccag