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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCGCGCGCTACAAGGAGCAGATCAAGAAGACGCGCCCAGGCCCCGCTCAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccaccaccgtcccttcctgctctctgcacccccacccccctagcccttgctctcttcattcacatacatgcagtacatctctcctcgactagtac...

Basic information

species Zea mays
transcript GRMZM2G092468_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092468_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g01250.1 (Oryza sativa), 5'ss of exon 2
AGCTCGCGCGCTACAAGGAGCAGATCAAGAAGACGCGCCCAGGCCCCGCTCAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccaccaccgtcccttcctgctctctgcacccccacccccctagcccttgctctcttcattcacat---acatgcagtacatctctcctcgactagtac
||||||| ||||||||||| ||||||||||||||  | ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||    | || |  |   ||  |  | ||  || |   ||    |   |   |   |||||   | | ||   |      ||   |||    | | ||| || 
AGCTCGCCCGCTACAAGGACCAGATCAAGAAGACCAGGCCAGGCCCCGCCCAGGAGGCCATCAAGGCACGCGCCATGAGGGTCCTCAAGCAGCGCAGAATgtatatctcccc--ttttttttttatttcatcatcattacttatcatacttatatactcttagattagattagaagattggttactctacttttgcctaata-

upper sequence: GRMZM2G092468_T02 (Zea mays), 5'ss of exon 2
lower sequence: PP1S54_150V6.1 (Physcomitrella patens), 5'ss of exon 2
AGCTCGCGCGCTACAAGGAGCAGATCAAGAAGACGCGCCCAGGCCCCGCTCAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtga-gccaccaccgtcccttcctgctctctgcacccccaccccccta-gcccttgctctcttcattcacatacatgcagtacatctctcctcgactagtac
||||     | ||   |||||||||||||||||| || |||||||| || || |||||||| ||||| || |||||| |  |  | ||||||   |  |||| | | ||       | |||  || | ||    ||    |           | |  | | |||||   ||| || |   |  |       |  ||  ||| 
AGCTGTTCAGGTATCGGGAGCAGATCAAGAAGACTCGGCCAGGCCCTGCGCAAGAGGCCGTGAAGGCCCGTGCCATGCGAATTTTGAAGCAGAAGAAAATgtaaagacagtttgtcctctttttggtttccctcccgttgcgaataggtagtcgtattatgttcatg-gcatccaagagatgaacaggatttgcaccggta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37622046|gb|CF675099.1|CF675099
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211387542|gb|FL169282.1|FL169282
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCACGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211087643|gb|FL395856.1|FL395856
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211394823|gb|FL369347.1|FL369347
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211439056|gb|FL385005.1|FL385005
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|13562177|gb|BG550397.1|BG550397
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|5928953|gb|AW056245.1|AW056245
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGNGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|17932462|gb|BM269422.1|BM269422
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|32908604|gb|CF013417.1|CF013417
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|18170299|gb|BM340139.1|BM340139
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|15312803|gb|BI478393.1|BI478393
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACA
EST: gi|22489538|gb|BU049461.1|BU049461
EST:     AAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: AAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211211675|gb|FL370026.1|FL370026
EST:     CAGGAGGCCGTCAAGSSACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211387544|gb|FL169284.1|FL169284
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|17970239|gb|BM277003.1|BM277003
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|32916309|gb|CF021121.1|CF021121
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAATATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|32863022|gb|CF002704.1|CF002704
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211439568|gb|FL408949.1|FL408949
EST:     CAGGAGGCCGTCAAGS-ACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211161696|gb|FL418714.1|FL418714
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCA
EST: gi|211408542|gb|FL414508.1|FL414508
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCN
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211348483|gb|FL394288.1|FL394288
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACC
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACC
EST: gi|76286967|gb|DV026535.1|DV026535
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|17929488|gb|BM266448.1|BM266448
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211434160|gb|FL401089.1|FL401089
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|87151661|gb|DY396450.1|DY396450
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
EST: gi|211387541|gb|FL169281.1|FL169281
EST:     CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGAT                         GTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA
genomic: CAGGAGGCCGTCAAGGCACGAGCCATGAGGGTCCTCAAGCAGCGCAGGATgtgagccacc ... ttttttacagGTACGAAGGGCAGCGTGACATGCTCTACAACCAAACATATAACCTTGACCA