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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATATCCGGGATGATGATGGGGGTCATTGTTGGCGTCGCCATCATGGCCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggttagggttgtgccgctgcgagcagactgtaataagcctcgccccgttctcgctacaccgtggagttggatcgttcaattcaggactaactgtgaggcttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtag

Basic information

species Zea mays
transcript GRMZM2G092129_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211162012|gb|FL219539.1|FL219539
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|149103443|gb|EE288836.2|EE288836
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|211162016|gb|FL219543.1|FL219543
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|148971559|gb|EE022272.2|EE022272
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|74241137|gb|DT649051.1|DT649051
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|71331353|gb|DR802511.1|DR802511
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|211162015|gb|FL219542.1|FL219542
EST:     CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|211162018|gb|FL219545.1|FL219545
EST:     CCGGCTCGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: gi|211162017|gb|FL219544.1|FL219544
EST:     CCGGCTCGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG                         GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGATATCCGGGATGATGATGGGGGTCATTGTTGGCGTCGCCATCATGGCCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggttagggttgtgccgctgcgagcagactgtaataagcctcgccccgttctcgctacaccgtggagttggatcgttcaattcaggactaactgtgaggcttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA